DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gria3 and Ir64a

DIOPT Version :9

Sequence 1:NP_001106213.1 Gene:Gria3 / 29628 RGDID:70958 Length:888 Species:Rattus norvegicus
Sequence 2:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster


Alignment Length:796 Identity:149/796 - (18%)
Similarity:249/796 - (31%) Gaps:259/796 - (32%)


- Green bases have known domain annotations that are detailed below.


  Rat   248 DILLERVMHGGAN------ITGFQIVNNENPMVQQFIQRW----VRLD---------------ER 287
            |:|.:....|..|      ..||    ::.|...|....|    :|::               .|
  Fly   107 DVLAQSPTSGRPNRPGNGPTGGF----SQTPSQAQSNSEWLEGVLRMEALRQIAVVDLACGAVSR 167

  Rat   288 EFPEAKNAPLKYTSALTHDAILVIAEAFRYL---------RRQRVDVSRRGSAGDCLANPAVPWS 343
            .|.|..:|.:.|            :|.|.:|         |.|..:.|  |...|.......|..
  Fly   168 RFLELASAKMLY------------SEKFHWLLIEDFAWHGRTQTAEGS--GKRDDGEMEEEEPPG 218

  Rat   344 QGIDIERALKMVQVQGMTG--NIQFDT-------YGRRTNYTI-DVYEMKVSGSRKAGYWN--EY 396
            |.|.......:..::...|  |:..:|       .....:||: ||:.   .|....|:.|  |.
  Fly   219 QQIQATDDEDLPSIESFLGGMNLYMNTELTLAKRMSEAAHYTLFDVWN---PGLNYGGHVNLTEI 280

  Rat   397 ERFVPFSDQQISN------------DSSSSENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYC 449
            ..|.|....|:..            |...:..|.:||.|            ::.:.|...|.   
  Fly   281 GSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVT------------NKNMTGTLMYY--- 330

  Rat   450 VDLAYEIAKHV----RIKYKLSIVGDGKYGARD--------PETKIW--------NGMVGELVYG 494
              |.:.::.|:    |..:.|.:      ..||        ..|..|        :||:|.|:..
  Fly   331 --LTHTMSGHIDTMNRFNFNLLM------AVRDMFNWTFVLSRTTSWGYVKNGRFDGMIGALIRN 387

  Rat   495 RADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIG 559
            ..||..||:...|.|.:.||.:....|.....:.:.|:.::.....||.|...::|:.||    |
  Fly   388 ETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWILIV----G 448

  Rat   560 VSVV-LFLVSRFSPYEWHL---------------------------------------------- 577
            ..|: :|::...:..||.|                                              
  Fly   449 CGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSK 513

  Rat   578 ---EDNNEEPRDPQSPPD-------------------------PPNEFGIF-NSLWFSLGAFMQQ 613
               |:..||..| .:|.|                         .|...|:| .|:.|.:|...||
  Fly   514 EKVEEKQEEYED-STPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQ 577

  Rat   614 GCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDS 678
            |...|...:|||.:......|:..|...|:|::...|.:|: ...|::..||. .:.:..|..|.
  Fly   578 GLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PKTIKTLSDLV-HSSLKVGMEDI 640

  Rat   679 GSTKEFFRRSKIAVYEKMW--------------------------------SY---MKSAEPSVF 708
            ...:::|..:|..|..:::                                ||   :.|.|....
  Fly   641 LYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAH 705

  Rat   709 TKTTA-----DGVARVRKSKGKFAFLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGVATP 763
            .|..|     |....:.:..| |||.::     ..:.|...::..||..:|......|...: ..
  Fly   706 AKDNAASNWLDPETGLLRHLG-FAFHVDVAAAYKIIAETFSEQDICDLTEVSMFPPQKTVSI-MQ 768

  Rat   764 KGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSAL--SLSNVAGVFYILV 826
            |.|.:...::..:.::.|.|:|....|.|...|..|     ..|.:||.|  .:..|:....||:
  Fly   769 KNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPC-----VKKIETSDLHVDMDTVSSALLILL 828

  Rat   827 GGLGLAMMVALIEFCY 842
            ....:.:|:...|..|
  Fly   829 FSYAITLMILGTEILY 844

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria3NP_001106213.1 PBP1_iGluR_AMPA_GluR3 29..400 CDD:107382 37/197 (19%)
ANF_receptor 40..383 CDD:279440 33/178 (19%)
PBP2_iGluR_AMPA 416..799 CDD:270433 97/523 (19%)
Glutamate binding 502..504 1/1 (100%)
Lig_chan 548..829 CDD:278489 74/403 (18%)