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Protein Alignment Gria2 and Ir64a

DIOPT Version :9

Sequence 1:	NP_001077280.1	Gene:	Gria2 / 29627	RGDID:	61862	Length:	883	Species:	Rattus norvegicus
Sequence 2:	NP_647962.1	Gene:	Ir64a / 38616	FlyBaseID:	FBgn0035604	Length:	859	Species:	Drosophila melanogaster

Alignment Length:	688	Identity:	122/688 - (17%)
Similarity:	225/688 - (32%)	Gaps:	204/688 - (29%)

- Green bases have known domain annotations that are detailed below.

  Rat   315 RKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN-----GKRI----N 370
            |.|..|.|.:.:.|:  .....|.||.::.........:|...|.:....|     .||:    :
  Fly   196 RTQTAEGSGKRDDGE--MEEEEPPGQQIQATDDEDLPSIESFLGGMNLYMNTELTLAKRMSEAAH 258

  Rat   371 YTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKT-------------------- 415
            ||  :.::...|....|:        |.|||:.|...|.|::..|
  Fly   259 YT--LFDVWNPGLNYGGH--------VNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVR 313

  Rat   416 --VVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLT------IVGDGKYG 472
              ||||....:..:|....|.|....:....:..:|...:.....:.:.|:      .|.:|::
  Fly   314 CMVVVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGYVKNGRF- 377

  Rat   473 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFS 537
                     :||:|.|:..:.||..||:...|.|.:.||.:....|.....:.:.|:.::.....
  Fly   378 ---------DGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIV 433

  Rat   538 FLDPLAYEIWMCIVFAYIGVSVV-LFLVSRFSPYEW----------------------------- 572
            ||.|...::|:.||    |..|: :|::...:..||
  Fly   434 FLQPFTNDVWILIV----GCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQ 494

  Rat   573 ------------------------HTEEFEDG----------------------RETQSSESTNE 591
                                    ..||:||.                      |:.:..::...
  Fly   495 EQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPER 559

  Rat   592 FGIF-NSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 655
            .|:| .|:.|.:|...:||...|...:|||.:......|:..|...|:|::...|.:|: ...|:
  Fly   560 VGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PKTIK 623

  Rat   656 SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVA-------- 712
            :..|| ..:.:..|..|....:::|..:|..|..:::     |:....|.||.|..|
  Fly   624 TLSDL-VHSSLKVGMEDILYNRDYFLHTKDPVSMELY-----AKKITSVPTTKENEADEDEPVDP 682

  Rat   713 ------------RVRKSKGKYAYLLESTMNEYIE-----------------------------QR 736
                        .:..|....|:..::..:.:::                             ::
  Fly   683 NPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQ 747

  Rat   737 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDS 801
            ..||..:|......|...| ..|.|.:...::..:.::.|.|:|....|.|...|..|     ..
  Fly   748 DICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPC-----VK 806

  Rat   802 KEKTSAL--SLSNVAGVFYILVGGLGLAMLVALIEFCY 837
            |.:||.|  .:..|:....||:....:.:::...|..|
  Fly   807 KIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILY 844

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.