Sequence 1: | XP_038939045.1 | Gene: | Ptprm / 29616 | RGDID: | 620776 | Length: | 1531 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001260594.1 | Gene: | Lar / 35259 | FlyBaseID: | FBgn0000464 | Length: | 2032 | Species: | Drosophila melanogaster |
Alignment Length: | 1860 | Identity: | 503/1860 - (27%) |
---|---|---|---|
Similarity: | 735/1860 - (39%) | Gaps: | 551/1860 - (29%) |
- Green bases have known domain annotations that are detailed below.
Rat 16 LMLAFLVRAAEICAFVSGFSVYREY-----------RGCLFEEPYS---TCGYSQADDDDFNW-- 64
Rat 65 ---------EQVNTLTKPT-----SDPWMPSG-----SFMLVNTSGKPEGQ-RAHLL----LPQL 105
Rat 106 KENDTHCIDFHYFVSSKSNAAPGLLNVYVKVNNGPLGNPI-----WNISGDP------------- 152
Rat 153 ----TRTWHRAELAV--STFWPNFYQVIFEVVTSGHQGYLAIDEVKVL----------------- 194
Rat 195 --GHPCTRTPHFLRI-------QNVEVNAGQFATFQCSAI--------GRTVAGDRLWLQ-GIDV 241
Rat 242 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI--RTEGGVGISNYAELVVKEPPVPIAPP 304
Rat 305 QLASVGATYL--------W---IQLNANSINGDGPIVAREVEYCTASGSWNDR---QPVDSTSYK 355
Rat 356 IGHLDPDTEYEISV-LLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQ----ITIR 415
Rat 416 WE-PF-------GY---------------------------NVTRCHSYNLTVRYCYQVG-GQEQ 444
Rat 445 VR----EE---------------------VSWD-MDNSHPQHTIT------------NLSPYTNV 471
Rat 472 SV-KLILMNPEGRKE----------------SQELTVQTDEDLPGAVPTESIQGSAFEEKIFLQW 519
Rat 520 REPTQTYGVITLYEITY--KAVSSFD----------PEIDL-----------------SNQSGRV 555
Rat 556 SKLGN-----------------ETHFLFFG----------------------------------- 568
Rat 569 -----------------LYPGTTYSFTIRASTAK-GFGPPATNQFTTKISAPS-MPAYEFETPLN 614
Rat 615 QTDNTVTVLLKPAQSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASILNSQY---- 675
Rat 676 ----YFAAEFPADSLQAAQPFT--IGDNKTYNGYWNTPLLPHKSYRIYYQAASRANGETKIDCVR 734
Rat 735 VATKAAIIVTQLTTPY-------IRIAPAAGDGQLTGAVTPKPVPEPEKGTDHT---VKIAGVIA 789
Rat 790 GILLFVIIF---LGVVLVMKKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCDEAFSFMD 851
Rat 852 THNLNGRSVSSPSSFTMKTNTLSTSVPNSYYPDPFVPTAILGAQQTRLSVPINDETHTMASDTSS 916
Rat 917 LAQPHTYKKREAADVPYQTGQLHPAIRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAK 981
Rat 982 KDENRMKNRYGNIIAYDHSRVRLQMLEGDNSSDYINGNYIDGYHRPNHYIATQGPMQETVYDFWR 1046
Rat 1047 MVWYENTASIIMVTNLVEVGRVKCCKYWPD-DTEIYKDIKVTLIDTELLAEYVIRTFAVEKGGAG 1110
Rat 1111 GEANCSPSREVPQRGIHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPNAGPLVVHCS 1175
Rat 1176 AGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEACLCGDTS 1240
Rat 1241 IPASQVRSLYYDMNKL---DPQTNSSQIKEEFRTLNMVTPTLRVEDCS---IALLPRNHEKNRCM 1299
Rat 1300 DILPPDRCLPFLITIDG-ESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTSVV 1363
Rat 1364 MLNDVDP--TQLCPQYWPENGVHRHGPIQVEFVSADLEEDIISRIFRIYNASRPQDG-HRMVQQF 1425
Rat 1426 QFLGWPMYRDTPVSKRSFLKLIRQVDKWQEEYNGGEGRTVVHCLNGGGRSGTFCAISIVCEMLRH 1490
Rat 1491 QRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYLNA 1530 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ptprm | XP_038939045.1 | FN3 | 298..377 | CDD:214495 | 29/93 (31%) |
FN3 | 399..493 | CDD:238020 | 34/188 (18%) | ||
fn3 | 515..590 | CDD:394996 | 24/173 (14%) | ||
R-PTPc-M-1 | 946..1235 | CDD:350481 | 144/289 (50%) | ||
R-PTPc-M-2 | 1321..1526 | CDD:350483 | 78/207 (38%) | ||
MAM | 42..198 | CDD:214533 | 39/227 (17%) | ||
ig | 208..290 | CDD:395002 | 17/92 (18%) | ||
Lar | NP_001260594.1 | Ig | 35..129 | CDD:299845 | |
I-set | 36..129 | CDD:254352 | |||
IG_like | 146..227 | CDD:214653 | |||
Ig | 159..228 | CDD:299845 | |||
I-set | 234..318 | CDD:254352 | |||
Ig3_RPTP_IIa_LAR_like | 249..317 | CDD:143216 | |||
fn3 | 324..404 | CDD:278470 | 10/44 (23%) | ||
FN3 | 423..514 | CDD:238020 | 21/102 (21%) | ||
FN3 | 520..610 | CDD:238020 | 13/95 (14%) | ||
FN3 | 616..707 | CDD:238020 | 17/99 (17%) | ||
FN3 | 712..810 | CDD:238020 | 30/104 (29%) | ||
FN3 | 832..907 | CDD:238020 | 15/74 (20%) | ||
FN3 | 914..1005 | CDD:238020 | 15/90 (17%) | ||
FN3 | 1012..1101 | CDD:238020 | 21/89 (24%) | ||
fn3 | 1106..1198 | CDD:278470 | 8/91 (9%) | ||
PTPc | 1476..1731 | CDD:214550 | 138/271 (51%) | ||
PTPc | 1503..1731 | CDD:238006 | 128/244 (52%) | ||
PTPc | 1763..2022 | CDD:214550 | 99/268 (37%) | ||
PTPc | 1791..2022 | CDD:238006 | 89/235 (38%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E2759_KOG4228 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |