DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atp2b1 and PMCA

DIOPT Version :9

Sequence 1:XP_038934528.1 Gene:Atp2b1 / 29598 RGDID:621303 Length:1258 Species:Rattus norvegicus
Sequence 2:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster


Alignment Length:1258 Identity:744/1258 - (59%)
Similarity:909/1258 - (72%) Gaps:85/1258 - (6%)


- Green bases have known domain annotations that are detailed below.


  Rat    21 ANHDG---DFGITLAELRALMELRSTDALRKIQESYGDVYGICTKLKTSPNEGLSGNPADLERRE 82
            |..||   .:||:|.:||.|||.|..:.:.||.|: |.::.:|.||.|||||||||:.||.|.|.
  Fly     2 ATIDGRPAQYGISLKQLRELMEHRGREGVMKIAEN-GGIHELCKKLYTSPNEGLSGSKADEEHRR 65

  Rat    83 AVFGKNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIVSLGLSFYQPPEGDNALCGEVSVGEEEG 147
            ..||.|.||||.|||||.|||||||||||||||:||:||||||||:|.:.|..:..|    ||| 
  Fly    66 ETFGSNVIPPKPPKTFLTLVWEALQDVTLIILEVAALVSLGLSFYKPADEDAPVLQE----EEE- 125

  Rat   148 EGETGWIEGAAILLSVVCVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVIRGGQVIQIPVADITV 212
              ..|||||.|||:||:.||:||||||:|||:||||||:|||.|.||:|||||:|.||.|.||.|
  Fly   126 --HHGWIEGLAILISVIVVVIVTAFNDYSKERQFRGLQNRIEGEHKFSVIRGGEVCQISVGDILV 188

  Rat   213 GDIAQVKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKSLDKDPLLLSGTHVMEGSGRMVVTA 277
            ||||||||||||||||.|||.||||:||||||||||||||..|.||::|||||||||||:|||||
  Fly   189 GDIAQVKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGPDVDPMVLSGTHVMEGSGKMVVTA 253

  Rat   278 VGVNSQTGIIFTLLGAGGEEEE---KKDEKKKEKKNKKQDGAIENRNKAKAQDGAA------MEM 333
            ||||||.|||||||||..:|:|   ||.:|:.::.||:::...||..:::.:...|      :..
  Fly   254 VGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTGENDGRSQIKGSQAPSQRETVTS 318

  Rat   334 QPLKSEEGGDGDEKDKKKANLP------------KKEKSVLQGKLTKLAVQIGKAGLLMSAITVI 386
            :..|||..|:         :||            ||||||||.||||||:|||.||..::.:|||
  Fly   319 EITKSESEGN---------HLPQSSSSGAAETGHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVI 374

  Rat   387 ILVLYFVIDTFWVQKRPWLAECTPIYIQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMM 451
            ||::.|.|.||.:.::||    ...|....||..||||||||||||||||||||:||||||||||
  Fly   375 ILIIQFCIKTFVIDEKPW----KNTYANNLVKHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMM 435

  Rat   452 KDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYINEKHYKKVPEPEAIPPNILSYLVT 516
            ||||||||||||||||||||||||||||||.|||||||:||.||..|.:|....||.::.:.:..
  Fly   436 KDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYICEKLCKVLPTLSDIPQHVGNLITM 500

  Rat   517 GISVNCAYTSKILPPEKEGGLPRHVGNKTECALLGFLLDLKRDYQDVRNEIPEEALYKVYTFNSV 581
            |||||.||||.|:.....|.||..||||||||||||:..|...||.:|:||.|:...:|||||||
  Fly   501 GISVNSAYTSNIMAGHNPGDLPIQVGNKTECALLGFVQGLGVKYQSIRDEITEDKFTRVYTFNSV 565

  Rat   582 RKSMSTVLKNSDGSFRIFSKGASEIILKKCFKILSANGEAKVFRPRDRDDIVKTVIEPMASEGLR 646
            ||||.||:...:|.:|:::|||||||:|||..|....|..:.|....::.:::.||||||.:|||
  Fly   566 RKSMGTVIPRPNGGYRLYTKGASEIIMKKCAFIYGHEGTLEKFTRDMQERLIREVIEPMACDGLR 630

  Rat   647 TICLAFRDFPAG---------EPEPEWDNENDVVTGLTCIAVVGIEDPVRPEVPEAIKKCQRAGI 702
            ||.:|:|||..|         :.||.||:|.:::|.|||:.|||||||||||||:||:|||||||
  Fly   631 TISVAYRDFVPGKAAINEVHIDGEPNWDDEENIMTNLTCLCVVGIEDPVRPEVPDAIRKCQRAGI 695

  Rat   703 TVRMVTGDNINTARAIATKCGILHPGEDFLCLEGKDFNRRIRNEKGEIEQERIDKIWPKLRVLAR 767
            ||||||||||||||:||:|||||.|.:|||.||||:||||||:..|:|:|..|||:|||||||||
  Fly   696 TVRMVTGDNINTARSIASKCGILRPNDDFLILEGKEFNRRIRDSNGDIQQHLIDKVWPKLRVLAR 760

  Rat   768 SSPTDKHTLVKGIIDSTVSEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTD 832
            ||||||:|||||||||||||.|:||||||||||||||||||||||||||||||||||||||||||
  Fly   761 SSPTDKYTLVKGIIDSTVSENREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTD 825

  Rat   833 DNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTL 897
            |||:||||||||||||||||:||||||||||||||||||.|||..||||||||||||||||||||
  Fly   826 DNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTL 890

  Rat   898 ASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNA 962
            ||||||||.||..|||||||||.||||||||||||||.|.|||:::|.|||.|:...||:|||..
  Fly   891 ASLALATEFPTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLIIIFGLLFVGDVILDIESGRGQ 955

  Rat   963 PLHAPPSEHYTIVFNTFVLMQLFNEINARKIHGERNVFEGIFNNAIFCTIVLGTFVVQIIIVQFG 1027
            .|:|.|::|:||:|||||:|.||||||||||||:|||.||:..|.||.||.:.|.:.|::|:|:|
  Fly   956 ELNAGPTQHFTIIFNTFVMMTLFNEINARKIHGQRNVIEGLLTNPIFYTIWIFTMISQVLIIQYG 1020

  Rat  1028 GKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELAED-VE 1091
            ...||...|:::||||.||.|:|||:|||||:::||.:|..:...|.|..:|......|.|: .:
  Fly  1021 KMAFSTKALTLDQWLWCIFFGIGTLVWGQLITSVPTRKLPKILSWGRGHPEEYTDGMNLGEERFD 1085

  Rat  1092 EIDHAERELRRGQILWFRGLNRIQTQMDVVNAFQSGGSIQGALRRQPSIASQH------------ 1144
            .|| ::::.|.|||||.|||.|:|||:.|:.||:|  :::. |..:.|:.|.|            
  Fly  1086 SID-SDKKPRAGQILWIRGLTRLQTQLRVIRAFRS--TLED-LNERRSMHSLHSLRSPRTGIPVA 1146

  Rat  1145 ----HDVTNVS--TPTHIRVVNAFRSSLYEGLEKPESRSSIHNFMTHPEFRIEDSEPHIPLIDDT 1203
                |.:.|.:  .|.:|:     .....|....|:::.::.:.|..|:....|.:|.   ....
  Fly  1147 VGGGHPLYNFNLLNPNYIK-----HQQQQEPKLPPQTQLNVSSGMMSPDISYIDEDPQ---QQQR 1203

  Rat  1204 DAEDDAPTKRNSSPPPSPNKNNN 1226
            ...:...::|:|.|...|:.|.:
  Fly  1204 TLHNGLTSQRSSMPSNVPSSNQS 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atp2b1XP_038934528.1 ATPase-IIB_Ca 15..1064 CDD:273668 699/1075 (65%)
ATP_Ca_trans_C 1103..1187 CDD:403580 27/101 (27%)
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 699/1075 (65%)
Cation_ATPase_N 36..104 CDD:279080 46/68 (68%)
E1-E2_ATPase 172..448 CDD:278548 173/288 (60%)
Cation_ATPase 505..598 CDD:289987 53/92 (58%)
HAD_like 676..807 CDD:119389 110/130 (85%)
Cation_ATPase_C 873..1051 CDD:279079 120/177 (68%)
ATP_Ca_trans_C 1096..1142 CDD:289209 20/48 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 256 1.000 Domainoid score I1961
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1376 1.000 Inparanoid score I115
OMA 1 1.010 - - QHG53587
OrthoDB 1 1.010 - - D115892at2759
OrthoFinder 1 1.000 - - FOG0000362
OrthoInspector 1 1.000 - - otm44563
orthoMCL 1 0.900 - - OOG6_100143
Panther 1 1.100 - - O PTHR24093
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X220
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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