Protein Alignment Pou3f4 and pdm2

DIOPT Version :9

• Sequence 1: NP_058948.1
• Gene: Pou3f4 / 29589
• RGDID: 61947
• Length: 361
• Species: Rattus norvegicus
• Sequence 2: NP_001285877.1
• Gene: pdm2 / 34673
• FlyBaseID: FBgn0004394
• Length: 893
• Species: Drosophila melanogaster
• Alignment Length: 342
• Identity: 139/342 - (40%)
• Similarity: 170/342 - (49%)
• Gaps: 92/342 - (26%)

  Rat    25 MQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQ 89
            :|..:.|:..|::.|......:||                  :|:.||.|||....:.|
  Fly   575 LQALAQFQALQQMKQQQREDPLPS------------------YSTPLAKSPLRSPSLSP------ 615

  Rat    90 LGAIIHHRSPHVAHHS-------PHTNHPNAWGASPAPNSSITSSGQPLNVYSQPGFTVSGMLEH 147
                       |..||       |::...|:.|.|.|..:..|.|.|     .||....|.....
  Fly   616 -----------VPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQ-----QQPQLQQSTPKPT 664

  Rat   148 GGLTPPPAAASTQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQ 212
            .|||...|.|..                      :.|.|||...:|||||||.||||||||||||
  Fly   665 SGLTVASAMAKL----------------------EQSPEETTDLEELEQFAKTFKQRRIKLGFTQ 707

  Rat   213 ADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS--------------- 262
            .|||||:|.||||.||||||.|||||.|||||||||||||.||||:|||:
  Fly   708 GDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMT 772

  Rat   263 ---TGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRV 324
               :.:|.||     .||:||||||||.:|:..||..||...||.::|||.|::.|.::|||:||
  Fly   773 STLSSTPESI-----LGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRV 832

  Rat   325 WFCNRRQKEKRMTPPGD 341
            |||||||||||:.|..|
  Fly   833 WFCNRRQKEKRINPSLD 849

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Pou3f4	NP_058948.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	99..131		11/38 (29%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	144..192		9/47 (19%)
		POU	186..260	CDD:197673	60/73 (82%)
		Homeobox	281..335	CDD:395001	32/53 (60%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	334..361		4/8 (50%)
pdm2	NP_001285877.1	POU	691..755	CDD:197673	54/63 (86%)
		Homeobox	789..842	CDD:278475	31/52 (60%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3802
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810