DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pecam1 and bdl

DIOPT Version :9

Sequence 1:XP_038941702.1 Gene:Pecam1 / 29583 RGDID:61927 Length:726 Species:Rattus norvegicus
Sequence 2:NP_608822.1 Gene:bdl / 33635 FlyBaseID:FBgn0028482 Length:719 Species:Drosophila melanogaster


Alignment Length:447 Identity:84/447 - (18%)
Similarity:158/447 - (35%) Gaps:121/447 - (27%)


- Green bases have known domain annotations that are detailed below.


  Rat     2 LLALLLTMLLYASLQAQENSFTINSIHMESRPSWEVSNGQKLTLQCLVDISTTSKSRPQHQVLFY 66
            |||::|.|.:..:..|:::         ..:.:.|...|..:...|.:|....:..  .:.|.:.
  Fly    19 LLAIILLMNISCTSAARDH---------RRQTNLEAKVGSHVVFNCYIDFPFDAPI--PYLVHWT 72

  Rat    67 KDDALVY-----NVSSSE-----------HTE----SFVIPQSRVFHAGKYKCTVILNSKEKTT- 110
            ||:..::     ..|:||           |.|    |..:...|....|.|.|.|...::..:. 
  Fly    73 KDNKKIFTWYEQETSTSELFNGRLHLVENHPEFGRASVNLTAIRESDQGWYHCQVSFPNRSPSVR 137

  Rat   111 ---IEYQLTVNGVPMPEVTVDKKEVTEGGIVTVNCSMQ--EEKPPIYFK----IEKVELGTKNVK 166
               ..|.|.|.|..:..:....:.:.||.....:|.|:  |.....::|    :::|:...:...
  Fly   138 NNGTAYHLAVQGGSLIRIPPVNQTIREGQTAFFHCVMKHPENSQASWYKDGVLLQEVQDLVRRFY 202

  Rat   167 LSREKTSNMNFVLIEFPIEEQDHLLVFRCQAGVLSGIKMQTSE-FIRSEYVTVQEFFSTPKFQIQ 230
            :..:.:.:::      |....| |..:.|:.....| ::||:: |:..:|        ..|....
  Fly   203 MGPDGSLSID------PTMMSD-LGEYECKVRNSDG-ELQTAKAFLNIQY--------KAKVIYA 251

  Rat   231 PPEMIIEGNQ-----LHIKCSVQVAHLAQEFPEIIIQKDKAIVATSKQSKEAVYSV-----MALV 285
            |||:.:...|     .|.:.:..:.:|..|       || .::..|.......|.:     .|.|
  Fly   252 PPEVFLPYGQPAVLDCHFRANPPLKNLRWE-------KD-GLLFDSYNVPGVFYKMNGSLFFAKV 308

  Rat   286 E--HSGHYTCKVESNRISKASSILVNITELFPRPKLELSSSRL---DQGEMLDLSCSV------- 338
            :  |:|.|||...::..:...|.::::..|.| |...::...:   ..||..:|.|..       
  Fly   309 DENHAGSYTCTPYNDLGTDGPSPVISVIVLRP-PIFSVTPKAIYIQKLGEAAELPCEAIDRDGNN 372

  Rat   339 ---------SGAPV---------ANFTIQKEETVLSQYQNFSKIAEERDSGLYSCTA 377
                     .|.|:         .|.||    |.|          .|.|.|:|.|:|
  Fly   373 RPSIIWGRKDGQPLPADRFSLSGGNLTI----TGL----------VEGDRGIYECSA 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pecam1XP_038941702.1 Ig 33..117 CDD:416386 20/107 (19%)
Ig strand A' 36..38 CDD:409353 1/1 (100%)
Ig strand B 42..54 CDD:409353 2/11 (18%)
Ig strand C 61..67 CDD:409353 1/5 (20%)
Ig strand C' 70..78 CDD:409353 1/12 (8%)
Ig strand E 82..86 CDD:409353 2/7 (29%)
Ig strand F 96..101 CDD:409353 2/4 (50%)
Ig strand G 107..117 CDD:409353 2/13 (15%)
Ig_2 316..389 CDD:404734 18/90 (20%)
Ig_C17orf99 412..469 CDD:407611
Ig 501..575 CDD:416386
bdlNP_608822.1 IG_like 42..128 CDD:214653 17/87 (20%)
Ig 43..131 CDD:299845 18/89 (20%)
I-set 153..242 CDD:254352 15/96 (16%)
Ig 157..242 CDD:299845 15/92 (16%)
Ig_2 252..337 CDD:290606 19/92 (21%)
IG_like 260..327 CDD:214653 15/74 (20%)
I-set 341..428 CDD:254352 18/89 (20%)
IGc2 356..419 CDD:197706 17/74 (23%)
FN3 435..524 CDD:238020
FN3 554..636 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.