Sequence 1: | NP_058943.2 | Gene: | Scn10a / 29571 | RGDID: | 3629 | Length: | 1956 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 2624 | Identity: | 830/2624 - (31%) |
---|---|---|---|
Similarity: | 1180/2624 - (44%) | Gaps: | 808/2624 - (30%) |
- Green bases have known domain annotations that are detailed below.
Rat 25 EKQIAAHRA---AKKARTKHRGQ-----EDKGEKPRPQLDLKACNQLPKFYGELPAELVGEPLED 81
Rat 82 LDPFYSTHRTFMVLNK---SRTISRFSATWALWLFSPFNLIRRTAIKVSVHSWFSIFITITILVN 143
Rat 144 CVCMTRTDLPEKVEYVFTVIYTFEALIKILARGFCLNEFTYLRDPWNWLDFSVITLAYVGAAIDL 208
Rat 209 RGISGLRTFRVLRALKTVSVIPGLKVIVGALIHSVRKLADVTILTVFCLSVFALVGLQLFKGNLK 273
Rat 274 NKCIR------------------NGTDP--HKADNLSSEMAEYIFIKPGTTDPLLCGNGSDAGHC 318
Rat 319 PGGYVCLKTPDNPDFNYTSFDSFAWAFLSLFRLMTQDSWERLYQQTLRASGKMYMVFFVLVIFLG 383
Rat 384 SFYLVNLILAVVTMAYEEQSQATIAEIEAKEKKFQEALE-----VLQKEQEVLAALGIDTTS--- 440
Rat 441 LQSHSGSPLASKNANERRPRVKSRVSEGST---------DDNRSPQSDPYNQRRMSFLGLSSG-- 494
Rat 495 -RRRASHGSVFHFRAPSQDISFPDGITDDGVFHGDQESRRGSILLGRGAGQTGPLPRSPLPQSPN 558
Rat 559 PGRRHGEEGQLGVPTGELTAGAP-EGPALDTTGQKSFLSAGYLNEPFR-------------AQRA 609
Rat 610 MSVVSIMTSVIEELEESKLKCPPCLI------------SFAQKYLIWECCP-------------- 648
Rat 649 -KWRKFKMALFELVTDPFAELTITLCIVVNTVFMAMEHYPMTDAFDAMLQAGNIVFTVFFTMEMA 712
Rat 713 FKIIAFDPYYYFQKKWNIFDCVIVTVSLLELSASKKGSLSVLRTFRLLRVFKLAKSWPTLNTLIK 777
Rat 778 IIGNSVGALGNLTFILAIIVFIFALVGKQLLSEDYGCRK---DGVSVWNGEKLRWHMCDFFHSFL 839
Rat 840 VVFRILCGEWIENMWVCMEVSQK---SICLILFLTVMVLGNLVVLNLFIALLLNSFSADNLTAPE 901
Rat 902 DD-GEVNNLQLALARI-----------------------------------QVLGHRASRAI--- 927
Rat 928 -------------ASYISSHCR--------FRWP----------------------KVETQLGMK 949
Rat 950 PPLTSS----------------------------------------------------------- 955
Rat 956 ----------------------------------------------------------------- 955
Rat 956 --------------------------EAKNH----------IATDAVSAAVGNLTKPALSSPK-- 982
Rat 983 ------------------------------------EN-----HGDF------------------ 988
Rat 989 ---------ITDPN---------VWVSVPIAEGESD---LDE----------------------- 1009
Rat 1010 ---------------------LEED--------------------ME------------QASQSS 1021
Rat 1022 W----------------------------QEEDP----KGQQEQLPQ------------------ 1036
Rat 1037 --------VQKCENHQA------ARSPASMMSSEDLAPYLGESWKRKDSPQVPA----------- 1076
Rat 1077 ---------------------------------------------------EGVDDTSS------ 1084
Rat 1085 ---SEGSTVDCPD----PEEILRK-------IPELADDL-------------------------- 1109
Rat 1110 -DEPDDCFTEGCTR----RCP----CCNVNTSKSPWATGWQVRKTCYRIVEHSWFESFIIFMILL 1165
Rat 1166 SSGALAFEDNYLEEKPRVKSVLEYTDRVFTFIFVFEMLLKWVAYGFKKYFTNAWCWLDFLIVNIS 1230
Rat 1231 LTSLIAKILEYSDVASIKALRTLRALRPLRALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLI 1295
Rat 1296 FSIMGVNLFAGKFSKCVDTRNNPFSNVNSTMVNNKSECHNQNSTGHFFWVNVKVNFDNVAMGYLA 1360
Rat 1361 LLQVATFKGWMDIMYAAVDSGEINSQPNWENNLYMYLYFVVFIIFGGFFTLNLFVGVIIDNFNQQ 1425
Rat 1426 KKKLGG--QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTRQAFDIIIMVLIC 1488
Rat 1489 LNMITMMVETDEQGEEKTKVLGRINQFFVAVFTGECVMKMFALRQYYFTNGWNVFDFIVVILSIG 1553
Rat 1554 SLLFSAILKSLENYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLV 1618
Rat 1619 MFIYSIFGMASFANVVDEAGIDDMFNFKTFGNSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNL 1683
Rat 1684 PNSNGSRGNCGSPAVGIIFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSEDDFDMFYET 1748
Rat 1749 WEKFDPEATQFIAFSALSDFADTLSGPLRIPKPNQNILIQMDLPLVPGDKIHCLDILFAFTKNVL 1813
Rat 1814 GESGELDS---LKTNMEEKFMATNLSKASYEPIATTLRWKQEDLSATVIQKAYRSYMLHRSLTLS 1875
Rat 1876 NTLHVPRAEEDGVSLPGEGYVTFMANSGLPDKSETASATSFPPSYDSVTRGL------------- 1927
Rat 1928 -SDRANINPSSSMQNEDEVAAKEG 1950 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Scn10a | NP_058943.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 31..54 | 6/30 (20%) | |
I. /evidence=ECO:0000305 | 116..404 | 139/307 (45%) | |||
Ion_trans | 129..406 | CDD:395416 | 137/296 (46%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 441..484 | 14/51 (27%) | |||
Na_trans_cytopl | <482..614 | CDD:403218 | 23/148 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 537..581 | 8/43 (19%) | |||
II. /evidence=ECO:0000305 | 646..910 | 131/285 (46%) | |||
Ion_trans | 663..893 | CDD:395416 | 122/235 (52%) | ||
Na_trans_assoc | 903..1148 | CDD:399489 | 88/825 (11%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1008..1094 | 33/296 (11%) | |||
III. /evidence=ECO:0000305 | 1141..1450 | 170/310 (55%) | |||
Ion_trans | 1152..1428 | CDD:395416 | 154/275 (56%) | ||
Na_channel_gate | 1420..1472 | CDD:240441 | 30/53 (57%) | ||
IV. /evidence=ECO:0000305 | 1459..1758 | 152/298 (51%) | |||
Ion_trans | 1476..1733 | CDD:395416 | 135/256 (53%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1906..1956 | 12/59 (20%) | |||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 110/234 (47%) |
Ion_trans | 705..902 | CDD:278921 | 98/204 (48%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 150/259 (58%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 126/239 (53%) | ||
GPHH | 2331..2386 | CDD:293510 | 29/54 (54%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.820 |