DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chi3l3 and Cht10

DIOPT Version :9

Sequence 1:XP_008759605.2 Gene:Chi3l3 / 295351 RGDID:1308790 Length:401 Species:Rattus norvegicus
Sequence 2:NP_001036422.1 Gene:Cht10 / 3355116 FlyBaseID:FBgn0250907 Length:2286 Species:Drosophila melanogaster


Alignment Length:389 Identity:139/389 - (35%)
Similarity:212/389 - (54%) Gaps:41/389 - (10%)


- Green bases have known domain annotations that are detailed below.


  Rat    20 SSYQLMCYYTSWAKDRPTVGSFKIGNIDPCLCTHLIYAFAGMRNNEIINTSEQDLID-----YEA 79
            |.|:::||:|:||..|..:|.|...:|:..||||:||.||.:..:|::..:.....|     |..
  Fly   963 SHYKVICYFTNWAWYRKGIGRFTPDDINTELCTHVIYGFAVLDYSELVLRTHDSWADVENNFYTR 1027

  Rat    80 INYLKDRNTELKTLLAIGGWKFGSA-PFSAMVSTPQNRQTFIKSVIKFLRQYKFDGLNLDWQYP- 142
            :..||.:.  :|..||:|||..... .:|.:|.:|..|..|::..::|:.:|.|:||:|||:|| 
  Fly  1028 VTSLKSKG--IKVSLALGGWNDSQGDKYSRLVRSPMARSRFVRHALEFIEKYGFEGLDLDWEYPV 1090

  Rat   143 -----GSRGSPPKDKHLFSVLVQEMRKAFEKESTEQEIPR-LLLTATVAGVIDTIQSGYKIPELS 201
                 .::|| .::|..|:..|||:.:||.        || |:|:..|:.....|.:||.||:||
  Fly  1091 CWQTECNKGS-TEEKDGFTAWVQELSEAFR--------PRGLMLSTAVSPSRKIIDAGYDIPQLS 1146

  Rat   202 QSLDYFQVMTYNLHDFQNGYTRENSPLYQSPSDTGIYAYLNVDAIISYWKDNGAAREKLIVGFPA 266
            :..|:..||||:.|...:..|...:|||..|.|.  :.|.||:..|:||.:.||..:||::|.|.
  Fly  1147 RYFDWIAVMTYDFHGHWDKKTGHVAPLYHHPDDD--FEYFNVNYSINYWMEKGAPSQKLVMGIPL 1209

  Rat   267 YGHNFILSDPSNTGINAPIVSTGPPGKFTGEAGLWAYYEICTFLNDGATDLWDGPQEV------- 324
            ||.:|.|.:.:::|:||...:.|..|:||..||..||||||..:|.      .|.|.|       
  Fly  1210 YGQSFTLENTNSSGLNAKAPAPGEAGEFTRAAGFLAYYEICERVNR------QGWQVVHDEFGRM 1268

  Rat   325 -PYAVQGNVWVGYDNVKSFKIKAQWLKDNKLGGAMVWPLDMDDFTGSFCQQGRFPLTSTLKHYL 387
             |||.:|..||.||:....:.|:..::..||||.|||.||:|||... |..|..||.:.:.:.|
  Fly  1269 GPYAYKGTQWVSYDSPDMVRKKSLLVRSLKLGGGMVWALDLDDFKNR-CGNGVHPLLTEIHNVL 1331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chi3l3XP_008759605.2 GH18_chitolectin_chitotriosidase 24..387 CDD:119351 136/383 (36%)
Cht10NP_001036422.1 Glyco_18 220..565 CDD:214753
GH18_chitolectin_chitotriosidase 221..586 CDD:119351
ChtBD2 697..737 CDD:214696
CBM_14 801..848 CDD:279884
CBM_14 875..918 CDD:279884
Glyco_18 966..1310 CDD:214753 129/362 (36%)
GH18_chitolectin_chitotriosidase 967..1331 CDD:119351 136/383 (36%)
Glyco_18 1410..1753 CDD:214753
GH18_chitolectin_chitotriosidase 1411..1774 CDD:119351
ChtBD2 1834..1871 CDD:214696
Glyco_18 1909..2253 CDD:214753
GH18_chitolectin_chitotriosidase 1910..2274 CDD:119351
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264489at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11177
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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