back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Gstt2 and GstD8

DIOPT Version :9

Sequence 1:	NP_036928.1	Gene:	Gstt2 / 29487	RGDID:	69362	Length:	244	Species:	Rattus norvegicus
Sequence 2:	NP_524916.1	Gene:	GstD8 / 48341	FlyBaseID:	FBgn0010044	Length:	212	Species:	Drosophila melanogaster

Alignment Length:	209	Identity:	54/209 - (25%)
Similarity:	95/209 - (45%)	Gaps:	35/209 - (16%)

- Green bases have known domain annotations that are detailed below.

  Rat     3 LELYLDLLSQPSRAVYIFAKKNGIPFQLRTVDLLKGQHLSEQFSQVNCLKKVPVLKDGSFVLTES 67
            ::.|....|.|.|:|.:.||..|:...::.:.::.|:.|..:|.::|....:|.|.|..|.:.||
  Fly     1 MDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKLNPQHCIPTLVDDGFSIWES 65

  Rat    68 TAILIYLSSKYQVADHWYPADLQARAQVHEYLGWHADNIRGTFGVLLWTKVLGPLIGVQVPEEKV 132
            .||||||..||...|..||:|.|.:|.|::.|.:....:..:|              |:....::
  Fly    66 RAILIYLVEKYGADDSLYPSDPQKKAVVNQRLYFDMGTLFQSF--------------VEAIYPQI 116

  Rat   133 ERNRNSMVLALQRLE------DKFLRDRAFIAGQQVTLADLMSLEELIQPVALGCNLFE------ 185
            ..|..:...|:|:::      |.||.|:.::||..:|:||:..|..:        :.||
  Fly   117 RNNHPADPEAMQKVDSAFGHLDTFLEDQEYVAGDCLTIADIALLASV--------STFEVVDFDI 173

  Rat   186 -GRPQLTAWRERVE 198
             ..|.:..|.|..:
  Fly   174 AQYPNVARWYENAK 187

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.