back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Gstt2 and GstD5

DIOPT Version :9

Sequence 1:	NP_036928.1	Gene:	Gstt2 / 29487	RGDID:	69362	Length:	244	Species:	Rattus norvegicus
Sequence 2:	NP_524914.3	Gene:	GstD5 / 48338	FlyBaseID:	FBgn0010041	Length:	216	Species:	Drosophila melanogaster

Alignment Length:	173	Identity:	43/173 - (24%)
Similarity:	77/173 - (44%)	Gaps:	18/173 - (10%)

- Green bases have known domain annotations that are detailed below.

  Rat     3 LELYLDLLSQPSRAVYIFAKKNGIPFQLRTVDLLKGQHLSEQFSQVNCLKKVPVLKDGSFVLTES 67
            ::.|........|.|.:.||..|:...::.::.|:...|..:|.::|....:|.|.|..|.:.||
  Fly     1 MDFYYSPRGSGCRTVIMVAKALGVKLNMKLLNTLEKDQLKPEFVKLNPQHTIPTLVDNGFSIWES 65

  Rat    68 TAILIYLSSKYQVADHWYPADLQARAQVHEYLGWHADNIRGTFGVLLWTKVLGPLIGVQVPE--- 129
            .||.:||..||...|..:|.|.:.:|.|::.|.:....:..:|     .|...||.....|.
  Fly    66 RAIAVYLVEKYGKDDTLFPKDPKKQALVNQRLYFDMGTLYDSF-----AKYYYPLFHTGKPGSDE 125

  Rat   130 --EKVERNRNSMVLALQRLEDKFLRDRAFIAGQQVTLADLMSL 170
              :|:|.:...:.:        ||..:.::||..:|:||:..|
  Fly   126 DFKKIESSFEYLNI--------FLEGQNYVAGDHLTVADIAIL 160

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.