DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gstt2 and GstE13

DIOPT Version :9

Sequence 1:NP_036928.1 Gene:Gstt2 / 29487 RGDID:69362 Length:244 Species:Rattus norvegicus
Sequence 2:NP_001188889.1 Gene:GstE13 / 35928 FlyBaseID:FBgn0033381 Length:226 Species:Drosophila melanogaster


Alignment Length:239 Identity:74/239 - (30%)
Similarity:116/239 - (48%) Gaps:38/239 - (15%)


- Green bases have known domain annotations that are detailed below.


  Rat     5 LYLDLLSQPSRAVYIFAKKNGIPFQLRTVDLLKGQHLSEQFSQVNCLKKVPVL--KDGSFVLTES 67
            ||..|.|.|:||..:.||..|:..:|:.||..|.:||||:|.::|...::||.  .||. |..:|
  Fly     6 LYYALFSPPARACILVAKLIGLDLELKPVDFAKKEHLSEEFVKLNPQHQIPVFVDSDGE-VYVDS 69

  Rat    68 TAILIYLSSKYQVADHWYPADLQARAQVHEYLGWHADNIRGTFGVLLWTKVLGPLIGVQVPEEKV 132
            .||:.:|.:||...|..||.||:.||.:...:  |.:|     |||.  :|:..::...:...:.
  Fly    70 HAIVCFLVA
KYAGNDQLYPRDLKRRAHIDHRM--HYEN-----GVLF--QVVKDIVARNIYGGEG 125

  Rat   133 ERNRNSMVLALQRLED--KFLRDRAFIAGQQVTLAD------LMSLEELIQPVALGCNLFEGRPQ 189
            |.|..|:.|......|  .||:..:|:.|.::::||      |::|:.|| ||..     |..||
  Fly   126 EYNPRSLTLCHNAYSDLEHFLQQGSFVVGNELSVADVSIHTTLVTLDLLI-PVER-----EKYPQ 184

  Rat   190 LTAWRERVEAFL---------GAELCQEAHNPIMSVLGQAAKKT 224
            ...|.||::..|         ||...|   ..|:|.:.:...|:
  Fly   185 TKQWMERMDKLLPDNEEINLKGARALQ---TRILSCMAENKAKS 225

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gstt2NP_036928.1 GST_N_Theta 3..78 CDD:239348 29/74 (39%)