DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slc6a6 and CG15279

DIOPT Version :9

Sequence 1:XP_008761345.1 Gene:Slc6a6 / 29464 RGDID:61912 Length:631 Species:Rattus norvegicus
Sequence 2:NP_609726.1 Gene:CG15279 / 34863 FlyBaseID:FBgn0028886 Length:639 Species:Drosophila melanogaster


Alignment Length:588 Identity:210/588 - (35%)
Similarity:332/588 - (56%) Gaps:40/588 - (6%)


- Green bases have known domain annotations that are detailed below.


  Rat    35 SPGTR---PEDEADGKPPQREKWSSKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIF 96
            ||..|   .:.||...|.:|..|...::|::|.....||||||||||:....||||||||||.|.
  Fly    31 SPALRDNSDDQEAAKVPEERATWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIV 95

  Rat    97 LFGSGLPVFFLEVIIGQYTSEGGITCWEKICPLFSGIGYASIVIVSLLNVYYIVILAWATYYLFQ 161
            ||..|.|:::||::|||::|.|.:..:: :||...|:|......|.:|:.||..::|....|..:
  Fly    96 LFLIGKPIYYLEMVIGQFSSRGSVKVFD-LCPAMKGVGAGQAFQVFMLSTYYAALVAIIGRYFIE 159

  Rat   162 SFQKDLPWAHCNHSWNTPQCMEDTLRRNESHWVSLSA-----ANFT-----SPVIE----FWERN 212
            ||:..|||:.|...|.. .|:...  .:.|:|..|.:     .|:|     ..||.    ::.:.
  Fly   160 SFRNPLPWSTCRAEWGI-HCINSA--PDASNWSQLESNDQRPQNYTMKSQNDRVITSSEWYFVKE 221

  Rat   213 VL----SLSSGIDHPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVR 273
            ||    ::..||..|   .|:|.:.|.:.|...||.|.:||:|:||..||.|.||:.::.|||||
  Fly   222 VLHEKPNIEEGIGLP---NWELVIGLFIAWSCVFFIIRRGVKSSGKASYFLALFPYVIMGVLLVR 283

  Rat   274 GLTLPGAGEGIKFYLYPNISRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSYRDCML 338
            .:||||:.:||.:::.|...::.||:||..|.||.|:|.::|.|.:....|:||:.:|.:||..:
  Fly   284 AVTLPGSIDGIYYFIKPQWGKILDPKVWYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAI 348

  Rat   339 LGCLNSGTSFVSGFAIFSILGFMAQEQGV-DIADVAESGPGLAFIAYPKAVTMMP-LPTFWSILF 401
            :..|::.||.::||.||.|||.:|.|.|. ||..|.:.|.|||||:||.|:.... ||..:|:||
  Fly   349 VTGLDTMTSLLAGFTIFGILGHLAHEIGTDDIGSVVKGGAGLAFISYPDAIAKFKNLPQIFSVLF 413

  Rat   402 FIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCSISYLLGLTMVTEGGMYVFQ 466
            |:||.:||:.|........:|::.|.:|:|.:  ::..:.||:|   |:.:||..:|.||.|:..
  Fly   414 FLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQ--WQCSLLIAVV---SFFIGLMYITPGGQYMLT 473

  Rat   467 LFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYDGIEDMIGYRPGPWMKYSWAVITPALCVGCFI 531
            |.|::.||.:.|: :...|.:.|.||||.|.|...||.|:|.:.|.:.:..|::|||.:.....|
  Fly   474 LVDFFGASMIALV-LGIAELYTIGWIYGTDRLCKDIEFMLGRKVGLYWRLCWSIITPLIMTVILI 537

  Rat   532 FSLVKYVPLTYNKVYRYPDWAIGLGWGLALSSMVCIPLVIVILLCRTEG-PLRVRIKYLITPREP 595
            :....|.|||||.:. ||:|:..:||.:....::.:|:.:::.:.|..| .|..:|:...||:: 
  Fly   538 YFYATYQPLTYNNIV-YPNWSYSIGWLITAFGILQLPIWMIVAIVRDPGQTLGAKIRGAFTPKK- 600

  Rat   596 NRW 598
             .|
  Fly   601 -NW 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Slc6a6XP_008761345.1 SLC5-6-like_sbd 51..592 CDD:382020 201/561 (36%)
CG15279NP_609726.1 SLC5-6-like_sbd 50..598 CDD:294310 201/561 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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