DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slc5a4 and CG31262

DIOPT Version :9

Sequence 1:NP_001099853.1 Gene:Slc5a4 / 294341 RGDID:1306923 Length:671 Species:Rattus norvegicus
Sequence 2:NP_001138069.2 Gene:CG31262 / 318649 FlyBaseID:FBgn0051262 Length:579 Species:Drosophila melanogaster


Alignment Length:643 Identity:138/643 - (21%)
Similarity:247/643 - (38%) Gaps:158/643 - (24%)


- Green bases have known domain annotations that are detailed below.


  Rat    39 DISVIVIYFVVVMAVGVW------------AMVKTNRST------VGGFFLAGRSMTWWPMGASL 85
            |..|:|...::....|::            ::.:.||.|      :..:.:..|:|...|:..:|
  Fly    10 DYLVLVAMTLLSTGTGIYFGALKKKHKNKKSVSEDNRRTNFGSEKIDEYLMGSRNMKVIPVSITL 74

  Rat    86 F--ASNIGSGHFVGLAGTGAATGIAVTAFESHSFALLLVLGWFFVPIYIKAGVMTMPEYLRKRFG 148
            :  .|.||:...:...||.....|.....:..:|:      :.::|:|....:.:..|||..||.
  Fly    75 YRVTSIIGTPSEIYHYGTQYYLIIVAIILQGIAFS------YVYLPVYSALQIGSAYEYLGLRFN 133

  Rat   149 GKRLQIYLSVLSLFICVILT-ISADIFSGAIFIKLALGLDLYLAIFILLAITAVFTITGGLASVI 212
            .   .|..:...:::..||| :...::..|:.:....||:.:|...:::.....:|..|||.:|:
  Fly   134 S---IIRTTASFMYVFGILTYLPFIVYVPALSLSQVSGLNTHLIGLVIILACVTYTFMGGLKAVV 195

  Rat   213 YTDTLQAIIMLVGSFILMIYAFVEVGGYESFTEKYMNAIPSVV----EGDNLTISPKCYTPQPDS 273
            :||..|..:|.:.   |:..||:.:        .|.|.:.:|.    :|..|.::..  .|.|..
  Fly   196 HTDVWQVAVMFLS---LVAVAFLAI--------YYSNGLVAVFDDAEQGGRLMLANT--NPSPYV 247

  Rat   274 FHIFRDAVTGDIPWPGTAFGMPITALWYW-CIN---QVIVQRCLCGKNMSHVKAACIV------- 327
            .|              |.:.:.|....:| .:|   |.:|||.:...::...:.|..:       
  Fly   248 RH--------------TVWSVLIGGFSFWTSVNAGGQHMVQRYMSLPSLKKSRQASFIFTIGVSI 298

  Rat   328 ----CGYLKLLPIFFMVM---PGMISRILYTDMVACVVPSECVKQCGVDVGCTNYAYPMLVLKLM 385
                |.::.|| :|....   |.....||..|.   ::|...|:..|       :.|        
  Fly   299 FIALCCFMGLL-LFSKYKDCDPRSAGMILNDDQ---LLPLFVVQSVG-------HIY-------- 344

  Rat   386 PMGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKIRK-KASERELLIAGRLFVSVLIVTSI 449
              |:.||.::.:..:.:|||:|.||:.|.:|..|:.....| :.|||:..|   |..:.:|...|
  Fly   345 --GMPGLFIAGIFGAGLSSLSSCFNTVSMVFLEDIVRGFFKMEPSERQSTI---LIKTCIIFQGI 404

  Rat   450 LWVPIVEVSQGGQ-LIHYTEAISSYLGPPIAAVFLVAIFCKRVNEQG-AFWGLMVGLVLGLIRMI 512
            |...||.:.|..: ::....:|||........||.:.:.....|..| |..||...|:.|.|...
  Fly   405 LAFLIVFLLQHLRGILSVCNSISSITAGTSFGVFTLGMLFPWANTIGTAVGGLSSVLLAGWISFG 469

  Rat   513 AEFSYGTG---SCLAPSSCPKVICGVH------------YLYYAIILFFVSIL-----VILG--V 555
            ::.:..:|   |.:.|.|..:.:..|.            :..|.:...:||.:     |::|  |
  Fly   470 SQIAAASGQLKSGMLPVSVKECVGNVTLPEDPWVDQDQVFPLYRLSYHWVSPIGVVTAVVVGALV 534

  Rat   556 SYLTKPI-----------PDVH--LYRLCWSLRNSEEERIDLDAEDREENEADARTEE 600
            |.:|||.           |.:|  |.|.|:..||..|                 ||||
  Fly   535 SLITKPADIKTLHAELISPVIHRFLPRECFRGRNLNE-----------------RTEE 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Slc5a4NP_001099853.1 SLC5-6-like_sbd 38..671 CDD:294310 138/643 (21%)
CG31262NP_001138069.2 SLC5sbd_NIS-SMVT 9..522 CDD:271383 119/571 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340249
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243316at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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