DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chrne and nAChRbeta1

DIOPT Version :9

Sequence 1:XP_017452660.1 Gene:Chrne / 29422 RGDID:2353 Length:547 Species:Rattus norvegicus
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:502 Identity:167/502 - (33%)
Similarity:266/502 - (52%) Gaps:51/502 - (10%)


- Green bases have known domain annotations that are detailed below.


  Rat    71 SQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETLTTSVWIGIEWQD 135
            |..::|| .|...||..|:...|||:.....|.:...:....||::|||.:.:.::||:.:.|.|
  Fly    23 SASEDEE-RLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYD 86

  Rat   136 YRLNFSKDDFAGVEILRVPSEHVWLPEIVLENNIDGQFGVAYDCNVLVYEGGSVSWLPPAIYRST 200
            |:|.:.:.|:.|:.:||:|.:.||.|:|||.||.||.:.|.|..|||:|..|.|.|:|||||:|:
  Fly    87 YQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSS 151

  Rat   201 CAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNAI--NKIDIDTAAFTENGEWAIDYC 263
            |.::|||||||.|.|.:.|.|.|:|.::|..         |:  ||..:|.:.:.::|.|.|...
  Fly   152 CTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL---------ALYNNKNFVDLSDYWKSGTWDIIEV 207

  Rat   264 PGMIRHYEGGSTEDPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTV 328
            |..:..|||.|.. |.|||:.:.:|||||.|||.:|:|:|.||||.|.:|.::|||:| |:|.|:
  Fly   208 PAYLNVYEGDSNH-PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTL 270

  Rat   329 SINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTPTTHATSP 393
            .|::||:..|||.|:::.:|.|||.:||:.:||:|..::.|:.::..||::|.:.|.|.||....
  Fly   271 GISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPM 335

  Rat   394 RLRQILLELLPRLLGLSPP--------PEDPGAASPARRASSVGILLRAEELIL----KKPRSEL 446
            .:|.|.|..||..|.:..|        .|.||.:.||....|.|......:.|.    |:.:.|:
  Fly   336 YIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEV 400

  Rat   447 VFEGQRHR-----------HGTWTAAALCQNLSAA------APEVRCCVDAVNFVAESTRDQEAT 494
            :.....|.           .|.......|:..|.:      :||.....:||.|:||..|:::..
  Fly   401 MELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLY 465

  Rat   495 GEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFLGGYFNQVPDLPY 541
            .:...||..:...:|.:..:...::.:.|:..|.:        |.|:
  Fly   466 IQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM--------DAPH 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChrneXP_017452660.1 None
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 165/488 (34%)
Neur_chan_LBD 28..236 CDD:280998 86/218 (39%)
Neur_chan_memb 243..498 CDD:280999 72/255 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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