Sequence 1: | XP_017452660.1 | Gene: | Chrne / 29422 | RGDID: | 2353 | Length: | 547 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
Alignment Length: | 502 | Identity: | 167/502 - (33%) |
---|---|---|---|
Similarity: | 266/502 - (52%) | Gaps: | 51/502 - (10%) |
- Green bases have known domain annotations that are detailed below.
Rat 71 SQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETLTTSVWIGIEWQD 135
Rat 136 YRLNFSKDDFAGVEILRVPSEHVWLPEIVLENNIDGQFGVAYDCNVLVYEGGSVSWLPPAIYRST 200
Rat 201 CAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNAI--NKIDIDTAAFTENGEWAIDYC 263
Rat 264 PGMIRHYEGGSTEDPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTV 328
Rat 329 SINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTPTTHATSP 393
Rat 394 RLRQILLELLPRLLGLSPP--------PEDPGAASPARRASSVGILLRAEELIL----KKPRSEL 446
Rat 447 VFEGQRHR-----------HGTWTAAALCQNLSAA------APEVRCCVDAVNFVAESTRDQEAT 494
Rat 495 GEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFLGGYFNQVPDLPY 541 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chrne | XP_017452660.1 | None | |||
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 165/488 (34%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 86/218 (39%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 72/255 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |