DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arhgap18 and cv-c

DIOPT Version :9

Sequence 1:NP_001164046.1 Gene:Arhgap18 / 293947 RGDID:1305053 Length:665 Species:Rattus norvegicus
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:872 Identity:178/872 - (20%)
Similarity:318/872 - (36%) Gaps:281/872 - (32%)


- Green bases have known domain annotations that are detailed below.


  Rat    45 TMNPESSTKLSERPPFDRSSSQDSLDEVSMEAYWTELENIKRSTE----------------NCQE 93
            ||..:.|.|  .:.|..:..|.|  :..::..:||...:|:|.:.                |.::
  Fly  1439 TMRLDQSHK--PQTPQQKEESDD--ENFALSEHWTFQPHIRRWSRIGEMGLELPPPGLLSLNVEK 1499

  Rat    94 GQEAIVVKEPDEGELEEEWL--------KEAGLSN---LFGESADDSQ------ESIVFLSTLTR 141
            .:.:.....||..|.:...:        |..|:.|   ..||.:|..:      |.|       :
  Fly  1500 TESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGRLRRSGSERI-------K 1557

  Rat   142 TQAAAVQKRVETVSQTLRKKSKQYHI----PDVRDI--FAQQREAQE------------------ 182
            .||.|:.:|||::....||:..:.::    |.|.|:  |.|:...::                  
  Fly  1558 DQAKALLRRVESIKSRRRKRQNRENVVISGPTVLDLSQFGQRSSLRKPDAVYSTPPSPSALSPMH 1622

  Rat   183 ------------KSPDDSD----------------LRSVRTN---------ENEDQGKDDQPSSG 210
                        |.|..||                .||:||:         ....:||.|..||.
  Fly  1623 TFPKAPFFGNDLKVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLHFFSSPMSQLKEGKSDDSSSY 1687

  Rat   211 AVDNKEPIP------RVP-------------EDIPA---SETDINLEVSFAEQAVNQKELSKERM 253
            ..|::|...      |.|             :||.|   ||.....::...:...|..|:..:::
  Fly  1688 YSDSQESSTGGKLSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKKL 1752

  Rat   254 QKTRGNDASL------------PSFRL----------PKDKTGTTRIG---------------DL 281
              |||...:|            .|||.          .:|..|.|..|               :.
  Fly  1753 --TRGGSLNLGKDPKKRDGFRSSSFRSRSTSRKEAKNDEDTAGATTNGGSKRQPVVRWHSFQMEE 1815

  Rat   282 APQDMKKVCY-----------------------LSLIELTALYDVLG--------------VEL- 308
            .|..:.:.|:                       |.:|...||..:.|              .|| 
  Fly  1816 RPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELP 1880

  Rat   309 KQQKAVKIKT-RDSGLFGIPLTILLEQDQRKVPGTRIPLIFQKLISCIEEGSLETEGLLRIPGAA 372
            |..|.:|:.. :|..:||:||.::|::.     |..:||..:.....::..:|:..|:.|..|..
  Fly  1881 KFIKKIKMPDYKDKKVFGVPLLMILQRS-----GQTLPLAVRAAFRWLQLNALDQVGIFRKSGGK 1940

  Rat   373 MRVKNLCQELEAKFYEGTFNWESV----KQHDAASLLKLFLRELPQPLLSTEYLKAFQAV-QNLP 432
            .|:..|.:::|..  :.|.....|    :.:|.|.:||.:.||||:.||:|:..:.|.|: |:||
  Fly  1941 SRIMKLREQIEVT--DSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQHLP 2003

  Rat   433 TKKEQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTAVNVAMVMAPNLFMCHA---- 493
            . :.:|.|:...|:||||.||:.|..|||||..|..|.::|:||:.|:.:.:|.::|  |:    
  Fly  2004 A-EVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIF--HSSIST 2065

  Rat   494 -------------LGLKSSEHREFEMAAGTANTMHLLIRYQKLLWTIPKFIVNQVRKHNTAHQKK 545
                         .|....:.:|...|..:...:..:|.:.|.::|..|   .::.|.|.::.::
  Fly  2066 GSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIYTAAK---EKLSKCNFSYMEE 2127

  Rat   546 ER-RAMKKLLKKMAYDREKHEKQDRAA----NGADVPQGVIRVQAPHLSKVSMAIQ--------- 596
            .: ..::.|.:.|.:...:....:..:    .|.:..:|...:.:.:.|.|.:|.:         
  Fly  2128 SKPLPLEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLR 2192

  Rat   597 ----LTE-ELKASDVLARFLSQESG------VAQTLKK----GEVFLYEIGGNIGERCLDDDTYM 646
                .|| |....:||...:.|.:.      ..||:||    .|::.|.:.|.:........::.
  Fly  2193 LWRCSTEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKKLDDRTEIYQYALDGQLTTDFCVLRSWQ 2257

  Rat   647 KDLYHLNPNAEWVI--------KSKPV 665
            .||    |....||        |:||:
  Fly  2258 TDL----PRGACVIVETSIDHAKAKPL 2280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arhgap18NP_001164046.1 RhoGAP_ARHGAP18 323..536 CDD:239856 64/234 (27%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 1/1 (100%)
RhoGAP_DLC1 1893..2116 CDD:239840 65/235 (28%)
SRPBCC 2148..2343 CDD:301327 26/137 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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