DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gcm1 and gcm2

DIOPT Version :10

Sequence 1:NP_058882.1 Gene:Gcm1 / 29394 RGDID:61852 Length:436 Species:Rattus norvegicus
Sequence 2:NP_609302.1 Gene:gcm2 / 34280 FlyBaseID:FBgn0019809 Length:606 Species:Drosophila melanogaster


Alignment Length:430 Identity:143/430 - (33%)
Similarity:205/430 - (47%) Gaps:83/430 - (19%)


- Green bases have known domain annotations that are detailed below.


  Rat    16 WDINDMKLPQ-NVKKTDWFQEWPDSYVKHIYSSDDRSAQRHLSSWAMRNTNNHNSRILKKSCLGV 79
            |||||..:|. ..::.|.|.||.|.:|:||||..:..|::|:|.||||||||||..|||||||||
  Fly    67 WDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLHNEEAKKHISGWAMRNTNNHNVNILKKSCLGV 131

  Rat    80 VVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPN--C-NGPLKLIPCRGHGGFPVTNFWRHDG 141
            :|||:.|:...|.||.||||||||||:||:.|:|||  | .|.|::.|||||.|:|||:||||.|
  Fly   132 LVCSQHCTLPNGSKINLRPAICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSG 196

  Rat   142 RFIFFQSKGEHDHPRPETKLEAEARRAMKKVHMASASSSLRMKGRPEMKGLPGEIPSQGSLPLTW 206
            ..||||:||.|||.||:.|..:.::||..:|.:|..|::..:..:..:.||..:...|.||    
  Fly   197 NAIFFQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQAKQQHSL---- 257

  Rat   207 SFQEGVQLPSGYSTPLIANA---PQQNSLNDCLSFPK---SYDLGGTTELEDPTSTLDPTKLYER 265
             ..:.::.|: .|.||...|   .|.|:...|..:..   ||       |:|.|:.       ..
  Fly   258 -ISKVLKRPA-VSNPLAHTALDIYQYNACGKCAGYSHCTCSY-------LDDSTTA-------RS 306

  Rat   266 YKFSSSKVYSAEDQFQPPVPGVYGDYDEAQTWNKNAVLGRSPTDD------------TYYPPYPL 318
            ::.|.|..|.                  ..:|..:.....:|.:.            ||  .||:
  Fly   307 HQLSQSSNYG------------------TNSWPLSGSESSAPCETAANVFTVNHQHITY--NYPI 351

  Rat   319 PVASWPCDYLPSQSSLEHSPQQVPLEPPAAQPGHHPLW-TNPGGEPYEEKVPVDFSSYVPSVTYH 382
                    |..:.::...:|.:.|..|.|........: .:..|..:...|||...:...:|.|.
  Fly   352 --------YHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHTQCQAVAYD 408

  Rat   383 SPQQ----DPFLLAYGSHPQQQYALPGKSNRWDFDEEMAC 418
            |..|    :|..:.|    .|...|.|...:    ||::|
  Fly   409 SSPQLATPEPEFINY----SQIKHLGGGGGQ----EEISC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gcm1NP_058882.1 GCM 30..167 CDD:397602 84/139 (60%)
gcm2NP_609302.1 GCM 82..222 CDD:397602 84/139 (60%)

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