DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cct4 and CCT4

DIOPT Version :9

Sequence 1:NP_877966.1 Gene:Cct4 / 29374 RGDID:727937 Length:539 Species:Rattus norvegicus
Sequence 2:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster


Alignment Length:517 Identity:362/517 - (70%)
Similarity:446/517 - (86%) Gaps:2/517 - (0%)


- Green bases have known domain annotations that are detailed below.


  Rat    23 AYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA 87
            |::|:.||..:|.|||.|||||:|||||||||:|||||||.|.|:|:||||||||||||.|||||
  Fly    16 AFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPA 80

  Rat    88 ARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMS 152
            |:||||||:|||:.|||||||||:|||:||::|.||||||:|||.||:|||:...|.:|||..||
  Fly    81 AKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMS 145

  Rat   153 RPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGT 217
            .|::|.|||||:.||:||||||||||.||||:|::|:||:||.||...|||||::||::..||||
  Fly   146 TPIELDDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKNIKVISSLGGT 210

  Rat   218 IDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERA 281
            ::|.|||:|||.|.:.|.|.. .|:|||||||||||:||||||||:.::|||||.|||||:|||:
  Fly   211 VEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKEERS 275

  Rat   282 YILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVA 346
            ||||:||||||:||||||:||||||||:||||.|||:|:|.|||||:|||||||:|||:..:|:|
  Fly   276 YILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIA 340

  Rat   347 HIDQFTPDMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCV 411
            .:|.||.:.|.||:|.|||: :|:.|..||||..:.|:||:|:.|||||||:|||.||:||||||
  Fly   341 SLDHFTAENLSSADLVEEVA-SGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHDALCV 404

  Rat   412 IRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPIST 476
            :|||||.||.|.||||||||:||:|...::|:.|:::||.||||||:||||||||||||||||:|
  Fly   405 VRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLAENAGLNPIAT 469

  Rat   477 VTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNT 538
            |||||||||||||..|||||||.|::|..|.||||||||:|::||||||:||||||||:|||
  Fly   470 VTELRNRHAQGEKNAGINVRKGAITDIFAENVVQPLLVSISSITLATETIRSILKIDDIVNT 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cct4NP_877966.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 2/4 (50%)
TCP1_delta 25..538 CDD:239454 359/513 (70%)
Cpn60_TCP1 44..539 CDD:278544 350/496 (71%)
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 359/513 (70%)
Cpn60_TCP1 37..529 CDD:278544 347/492 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351947
Domainoid 1 1.000 698 1.000 Domainoid score I118
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4695
Inparanoid 1 1.050 727 1.000 Inparanoid score I589
OMA 1 1.010 - - QHG60896
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 1 1.000 - - FOG0004921
OrthoInspector 1 1.000 - - oto95640
orthoMCL 1 0.900 - - OOG6_101757
Panther 1 1.100 - - LDO PTHR11353
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3470
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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