DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smad2 and Mad

DIOPT Version :9

Sequence 1:NP_001264379.1 Gene:Smad2 / 29357 RGDID:3031 Length:467 Species:Rattus norvegicus
Sequence 2:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster


Alignment Length:499 Identity:284/499 - (56%)
Similarity:333/499 - (66%) Gaps:92/499 - (18%)


- Green bases have known domain annotations that are detailed below.


  Rat     1 MSSILPFTPPVVKRLLGWKKSAGGSGGAGGGEQNGQEEKWCEKAVKSLVKKLKK-TGRLDELEKA 64
            :.|:..||.|.||:|||||             |..:||||.||||.|||||||| .|.::|||:|
  Fly    87 LGSLFSFTSPAVKKLLGWK-------------QGDEEEKWAEKAVDSLVKKLKKRKGAIEELERA 138

  Rat    65 ITTQNCNTKCVTIPSTCSEIWGLSTANTVDQWDTTGLYSFSEQTRSLDGRLQVSHRKGLPHVIYC 129
            ::.....:||||||                              |||||||||||||||||||||
  Fly   139 LSCPGQPSKCVTIP------------------------------RSLDGRLQVSHRKGLPHVIYC 173

  Rat   130 RLWRWPDLHSHHELKAIENCEYAFSLKKDEVCVNPYHYQRVETPVLPPVLVPRHTEILTELPPLD 194
            |:||||||.||||||.:|.|:|.||.|:.|||:|||||:|||:|||||||||||:|.......| 
  Fly   174 RVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLPPVLVPRHSEFAPGHSML- 237

  Rat   195 DYTH----SIPENTNF-------------------PAGI--EPQSNY--IPETPPPGYI-SEDGE 231
            .:.|    |:|.|.::                   |:.:  .|.|.|  :..||||.|. ||||.
  Fly   238 QFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGN 302

  Rat   232 TSDQQLNQSMDTGS--PAELSPTTLSPVNHSLDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQ 294
            :     |...|.|.  .|::.           |:..|:|||||||.||||||||.||||.||.:.
  Fly   303 S-----NNPNDGGQLLDAQMG-----------DVAQVSYSEPAFWASIAYYELNCRVGEVFHCNN 351

  Rat   295 PSLTVDGFTDPS-NSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQ 358
            .|:.|||||:|| ||:|.|||.|||||||:|:|.||||||:||.|||:.|||:||||||||||||
  Fly   352 NSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQ 416

  Rat   359 SPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWG 423
            |.|||..:|:||:|||||||||:||||||||||.||:||||.||||||:||:|||||||||||||
  Fly   417 SRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWG 481

  Rat   424 AEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS 467
            |||.||.|||||||||:||:||||||||||||||||....||:|
  Fly   482 AEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smad2NP_001264379.1 MH1 8..172 CDD:412134 87/164 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 207..251 17/50 (34%)
PY-motif. /evidence=ECO:0000250 221..225 3/3 (100%)
MH2_SMAD_2_3 266..456 CDD:199826 151/190 (79%)
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 88/165 (53%)
MH2_SMAD_1_5_9 325..525 CDD:199822 157/199 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X373
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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