DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gata6 and pnr

DIOPT Version :10

Sequence 1:NP_062058.2 Gene:Gata6 / 29300 RGDID:2666 Length:587 Species:Rattus norvegicus
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:440 Identity:149/440 - (33%)
Similarity:178/440 - (40%) Gaps:185/440 - (42%)


- Green bases have known domain annotations that are detailed below.


  Rat   148 YQ--TLAALSSQGPAA------------YDGAPGGFVHSAAAAAAAAA------------AASSP 186
            ||  ||:|.|:...|:            :..|...:...|||.:||:|            |.::|
  Fly    27 YQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAP 91

  Rat   187 VYVPTTRVGSMLPGLPYLQGAGSGPSNHAGGAGAHPGWPQASADSPPYGGGGAAGGGAAGPGGAG 251
            ||||:.|        .|...|.     |.|.|.|...|..                       .|
  Fly    92 VYVPSNR--------QYNHVAA-----HFGSAAAQNAWTT-----------------------EG 120

  Rat   252 SATAHASARFPYSPSPPMANG---AARDPGGYVAAGGAGAGSVSGGGGSLAAMGGREHQYSSLSA 313
            ..:|||..   |||:..:..|   :|.||.|:                          |.||   
  Fly   121 FGSAHAQF---YSPNAAVMMGSWRSAYDPSGF--------------------------QRSS--- 153

  Rat   314 ARPLNGTYHHHHHHHPTYSPYMGAPLTPAWPAGPFETPVLHSLQSRAGAPLPVPRGPSADLLEDL 378
                                             |:|:                    :.|.  ..
  Fly   154 ---------------------------------PYES--------------------AMDF--QF 163

  Rat   379 SESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPS---SRRLGLSCAN 440
            .|.|||||||:|.||||||||||||||||||||.||||::||||||.||:.|   :||:||.|.|
  Fly   164 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTN 228

  Rat   441 CHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNINKSKACSGNSSVP 505
            |.|.||||||||.:|||||||||||.|||||.|||||:|:||||||||||......|...     
  Fly   229 CGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGA----- 288

  Rat   506 MTPTSSSSNSDDCTKNTSPPTQSTASGVGASVMSAVGESANPENSDLKYS 555
                                  .|.||.| |.:.|:.|.  .|..|||.|
  Fly   289 ----------------------GTGSGTG-STLEAIKEC--KEEHDLKPS 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gata6NP_062058.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 17..73
GATA-N 147..371 CDD:461628 45/251 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 209..259 9/49 (18%)
ZnF_GATA 383..428 CDD:238123 38/44 (86%)
GAT1 <437..>582 CDD:227928 57/119 (48%)
ZnF_GATA 437..488 CDD:238123 40/50 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 480..532 12/51 (24%)
pnrNP_476685.1 ZnF_GATA 168..212 CDD:238123 37/43 (86%)
ZnF_GATA 226..276 CDD:238123 40/49 (82%)
Blue background indicates that the domain is not in the aligned region.

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