DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pak4 and Pak

DIOPT Version :9

Sequence 1:NP_001099708.1 Gene:Pak4 / 292756 RGDID:1307705 Length:593 Species:Rattus norvegicus
Sequence 2:NP_001138013.2 Gene:Pak / 44039 FlyBaseID:FBgn0267698 Length:840 Species:Drosophila melanogaster


Alignment Length:773 Identity:253/773 - (32%)
Similarity:360/773 - (46%) Gaps:201/773 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat     3 GKKKKRVE----ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI-------EESARRPKPLID- 55
            |.|....:    ||.|:||||.||.|||....:|||:|..|..|:       :|..:.|:.::| 
  Fly    71 GSKPSHTDSKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMNSNISKQEQKKNPQAVLDV 135

  Rat    56 -----------PAC-----------------ITSIQPGAPKT--IVRGSK------GAKDGALTL 84
                       |:.                 ::|..|.:..|  .:.||.      |.:.|::||
  Fly   136 LKWFDNTTKQRPSSKYMTNAITTHSGSSLSRVSSSSPSSTPTDSELHGSNSGGNLIGVQLGSMTL 200

  Rat    85 -------------------------------LLDEFEN---MSVTRSNSL--------------- 100
                                           ||.:..|   |.:::|:|.               
  Fly   201 GPNANNVAVAGQILGNHYQQQQQHLLQQQQPLLHQNHNQHHMGISQSHSYNFVGHTVSSSTSQHS 265

  Rat   101 -------------RRESPPPPARAHQENGM------LEE-RAALARM--APDKA----------- 132
                         :::.||||..:..|...      :|: :.|:..|  ||...           
  Fly   266 SANEDDMLGPQHPQQQPPPPPVASRPERTKSIYTRPIEDLQPAIIPMPVAPATTPATPLQNHRTP 330

  Rat   133 GGRGRATG----HSEAGSGSGDRRRVGPEKRPKSSR-----EGPGGPQEV------SRDKRPLSG 182
            ||......    |:.|.:.....:.......|.:::     ||......:      |....|.:.
  Fly   331 GGISAPAASPMMHNNATTTLDKNKNNATPTSPTTTKTTAETEGTDATSTLLSATNPSCSTTPTTD 395

  Rat   183 PDVSTPQPGSL-----ASETKLAA-------------GRPFNTYPRADTD----------HPPRG 219
            |..:.|: |||     |..|..||             ...|:::|....|          |.|..
  Fly   396 PAPAAPR-GSLVETATAHATTAAATVATSTTTNHHSSASSFSSFPSFHDDDGTHHALPTIHCPTP 459

  Rat   220 TQGEPHTMAPNGPSAIGL------AAPQSSSSSRP------PTRAR---GAPSPGVLGPHASEPQ 269
            |....::.. :.|.|:.|      |:|..:|...|      ||.|:   |.||..|.|...:.||
  Fly   460 TSSSRNSTV-SFPVAVPLPPIVTPASPTPASIESPDLYTPEPTVAQVSAGGPSSQVAGNQIAVPQ 523

  Rat   270 LAPPARALAAPAVPPAPGPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGST 334
                  |..|||     ..|..|:...:.:::|.|:....|:.:|..|||........|||:|::
  Fly   524 ------AAVAPA-----ATPNTRAANAKKKKMSDEEILEKLRTIVSVGDPNRKYTKMEKIGQGAS 577

  Rat   335 GIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYRHENVVEMYNSYLVGDELWVVMEF 399
            |.|..|...|:|..||:|:|:|.:|.::||:.||:::||:.:|.|||...:||||.:|||||||:
  Fly   578 GTVYTAIESSTGMEVAIKQMNLSQQPKKELIINEILVMRENKHPNVVNYLDSYLVSEELWVVMEY 642

  Rat   400 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFC 464
            |.||:|||:||.|.|:|.||||||..|||||..|||..|||||||||:|||..||.|||:|||||
  Fly   643 LPGGSLTDVVTETCMDEGQIAAVCREVLQALEFLHANQVIHRDIKSDNILLGLDGSVKLTDFGFC 707

  Rat   465 AQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMI 529
            ||:|.|..:|.::||||||||||:::|..|||:||:||||:|.||||:|||||.||.||||:.:|
  Fly   708 AQISPEQSKRTTMVGTPYWMAPEVVTRKQYGPKVDLWSLGIMAIEMVEGEPPYLNENPLKALYLI 772

  Rat   530 RDNLPPRLKNLHKASPSLKGFLDRLLVRDPAQRATAAELLKHPFLTKAGPPASIVPLM 587
            ..|..|.:|...|.|.:.:.|||:.|..:..:||:|.:|||||||..|.|.||:.||:
  Fly   773 ATNGKPEIKEKDKLSSAFQDFLDQCLEVEVDRRASALDLLKHPFLKLARPLASLTPLI 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pak4NP_001099708.1 CRIB_PAK_like 10..48 CDD:238526 19/48 (40%)
PKc_like 302..593 CDD:304357 157/286 (55%)
S_TKc 328..574 CDD:214567 142/245 (58%)
PakNP_001138013.2 PBD 83..137 CDD:279166 21/53 (40%)
STKc_PAK_I 558..818 CDD:270814 146/259 (56%)
S_TKc 566..817 CDD:214567 142/250 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D757766at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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