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Protein Alignment Ca4 and CAH1

DIOPT Version :9

Sequence 1:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus
Sequence 2:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster

Alignment Length:	284	Identity:	87/284 - (30%)
Similarity:	130/284 - (45%)	Gaps:	49/284 - (17%)

- Green bases have known domain annotations that are detailed below.

  Rat    21 HWCYEIQAKEPNSHCSGPEQWTGD---CKKNQQSPINIVTSKTK----LNPSLTPFTFVGYDQKK 78
            ||.|    .|.|    ||..|..:   ...::|||::|..|..|    ||.:...:.:|....|.
  Fly     4 HWGY----TEEN----GPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKS 60

  Rat    79 K------WEVKNNQHSVEMSLGEDIYIFGGDLPTQ-YKAIQLHLHWSEESNKGSEHSIDGKHFAM 136
            .      |.|..|        |.|..:.||.|..| :|..|.|.||....:|||||::||..::.
  Fly    61 LVNPGYCWRVDVN--------GADSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSG 117

  Rat   137 EMHVVH----KKMTTGDKVQDSDSKDKIAVLAFMVEVGNEVNEGFQPLVEALSRLSKPFTNSTVS 197
            |:|:||    |..:.|:.   :.:.|.:|||...::.||...| ...:...|..:.......|:.
  Fly   118 ELHLVHWNTTKYKSFGEA---AAAPDGLAVLGVFLKAGNHHAE-LDKVTSLLQFVLHKGDRVTLP 178

  Rat   198 ESC-LQDMLPEKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYYDQEQ-- 259
            :.| ...:||:   :..|:.|:||||||.|.|:|||.||:.||::..||.........||.::
  Fly   179 QGCDPGQLLPD---VHTYWTYEGSLTTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEEC 240

  Rat   260 ---KLNMK--DNVRPLQPLGNRQV 278
               :.|.|  :|.||..|||.|::
  Fly   241 PCNEFNGKVINNFRPPLPLGKREL 264

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.