Sequence 1: | XP_038960355.1 | Gene: | Lrp2 / 29216 | RGDID: | 68407 | Length: | 4665 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996433.1 | Gene: | yl / 32367 | FlyBaseID: | FBgn0004649 | Length: | 1984 | Species: | Drosophila melanogaster |
Alignment Length: | 2049 | Identity: | 555/2049 - (27%) |
---|---|---|---|
Similarity: | 867/2049 - (42%) | Gaps: | 379/2049 - (18%) |
- Green bases have known domain annotations that are detailed below.
Rat 12 LLLAIAAC-----LEPVSSQ-ECGSGNFRCDNGYCIPASWRCDGTRDCLDDTDEIGCPPRSCESG 70
Rat 71 LFLCPAEGTCIPSSWVCDEDKDCSDGADEQQNCAGTTCSAQQMTCSNGQCIPSEYRCDHVSDCPD 135
Rat 136 GSDERNCHYPTCDQLTCANGACYNTSQRCDQKVDCRDSSDEANCTTLCSQKEFECGSGE-CILRA 199
Rat 200 YVCDHDNDCEDNSDE-RNCNYD--TCGGHQFTCSNGQCI-NQNWVCDGDDDCQDSGDEDGCESNQ 260
Rat 261 SHHRCYPR--EWACPGSGRCISIDKVCDGVPDCPEGDDENNV------TSGRTCGMGVCSVLNCE 317
Rat 318 YQCHQTP-FGGECFCPPGHIINSNDSRTCIDFDDCQIW-GICDQKCENRQGRHQCLCEEGYILER 380
Rat 381 GQHCKSSDSFSAASVIFSNGR---------DLLVGDLHGR--NFR--ILAESKNRGMVMGVDFHY 432
Rat 433 QKHRVFWTDPMQ--EKVFSTDINGLNTQEILNVSVDTPENLAVDWINNKLYLVETKVNRIDVVNL 495
Rat 496 EGNQRVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKDLVTTKVGWPAG 560
Rat 561 ITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSLVPHPFGISLFEEHVFFTDWTKMAVMK 625
Rat 626 ASKFTETNPQVYHQSSLRPHGVTVYHALRQPNATNPCGSNNGGCAQVCVLSHRTDNGGLGYRCKC 690
Rat 691 EFGFELDDDEHRCVAV--KNFLLFSSKTAVRGIPFTLSTQEDVMVPVTGSPSFFVGIDFDAQHST 753
Rat 754 VFYSDLSKDIIYKQKIDGTGKEVITANRLESVECLTFDWISRNLYWTDGGLKSVTVLRLADKSRR 818
Rat 819 QI--ISNLNNPRSIVVHPTAGYMFLSDWFRPAKIMRAWSDGSHL-----------MPIVNTSLGW 870
Rat 871 PN-GLAIDWSASRLYWVDAFFDKIEHSTLDGLDRKRLGHVD----QMTHPFGLTVFKDNVFITDW 930
Rat 931 RLGAIIRVRKSDGGDMTVI-------RRGISSVMHVKAYDADLQTGSNYCSQTTH----ANGDCS 984
Rat 985 HFCFPVPNFQRVCGCPYGMKLQRD--QMTCEGDPAREPPTQQCGSLSFPCNNGKCVPSFFRCDGV 1047
Rat 1048 DDCHDNSDEHQCGVFNN-----TCSPSAFACVRGGQCIPGQWHCDRQNDCLDGSDEQNCPTHATS 1107
Rat 1108 STCPSTSFTCDNHVCIPKDWVCDTDNDCSDGSDEKNCQASGTCQPTQFRCPDHRCISPLYVCDGD 1172
Rat 1173 KDCADGSDEAG-CV-LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPGM---CH 1232
Rat 1233 LDEFQCQGD-GTCIPNTWECDGHPDCIHGSDEHTGCVPKTCSPTHFLCDNG-NCIYKAWICDGDN 1295
Rat 1296 DCRDMSDEKDCPTQPFHCPSTQ---WQCPGYS-----------TCINLSALCDGVFDCPNGTDES 1346
Rat 1347 PLCNEPQQDQDSCSHFNGG--CTHQCMQGPFGATCLCPLGYQLANDTKTCEDINECDIPGFCSQH 1409
Rat 1410 CVNMRGSFRCACDPEYTLESDGRTCK--VTG--------------SENPLLV----VASRDKIIV 1454
Rat 1455 DNITAHTHNLYSLVQDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKRVVHDSGLSVTEM 1519
Rat 1520 IAVDWIGRNLYWTDYALETIEVSKIDGSHRTVLISKNVTKPRGLALDPRMGDNVMFWSDWGHHPR 1584
Rat 1585 -----------------IERASMDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYIEFCD 1632
Rat 1633 Y---DGHNRRQ--VIASDLVLHHPHALTLFEDFVYWTDRGTRQVMQANKWHGGNQSVVMYSVHQP 1692
Rat 1693 LGITAIHPSRQP-PSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDSVNCVRGDQPFLMS 1756
Rat 1757 VRDNIIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWVENPGEIHRVKTDGSNRTVFA 1821
Rat 1822 PLSLLGSSLGLALDW------------VSRNIYYTTPASRSIEVLTLKGDTRYGKTLIANDGTPL 1874
Rat 1875 GVGFPVGIAVDPARGKLYWSDHGTDSGVPAKIAS 1908 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrp2 | XP_038960355.1 | LDLa | 28..62 | CDD:238060 | 15/33 (45%) |
LDLa | 67..103 | CDD:238060 | 3/35 (9%) | ||
LDLa | 108..142 | CDD:238060 | 9/33 (27%) | ||
LDLa | 148..179 | CDD:238060 | 3/30 (10%) | ||
LDLa | 183..217 | CDD:238060 | 15/35 (43%) | ||
LDLa | 222..256 | CDD:238060 | 17/34 (50%) | ||
LDLa | 265..299 | CDD:238060 | 13/35 (37%) | ||
LY | 460..500 | CDD:214531 | 13/39 (33%) | ||
LY | 502..547 | CDD:214531 | 18/44 (41%) | ||
LY | 550..590 | CDD:214531 | 16/39 (41%) | ||
LY | 775..817 | CDD:214531 | 16/41 (39%) | ||
Ldl_recept_b | 837..877 | CDD:423042 | 8/51 (16%) | ||
LY | 863..903 | CDD:214531 | 8/40 (20%) | ||
LDLa | 1025..1059 | CDD:238060 | 14/33 (42%) | ||
Ldl_recept_a | 1065..1101 | CDD:395011 | 18/35 (51%) | ||
LDLa | 1110..1144 | CDD:238060 | 15/33 (45%) | ||
LDLa | 1150..1184 | CDD:238060 | 16/34 (47%) | ||
LDLa | 1188..1223 | CDD:238060 | 13/34 (38%) | ||
LDLa | 1231..1263 | CDD:197566 | 11/32 (34%) | ||
LDLa | 1272..1306 | CDD:238060 | 16/34 (47%) | ||
LDLa | 1313..1345 | CDD:197566 | 11/45 (24%) | ||
FXa_inhibition | 1359..1394 | CDD:405372 | 15/36 (42%) | ||
EGF_CA | 1396..1435 | CDD:214542 | 13/38 (34%) | ||
LY | 1507..1549 | CDD:214531 | 11/41 (27%) | ||
LY | 1551..1595 | CDD:214531 | 11/60 (18%) | ||
LY | 1597..1638 | CDD:214531 | 10/43 (23%) | ||
FXa_inhibition | 1715..1746 | CDD:405372 | 11/30 (37%) | ||
Ldl_recept_b | 1889..1933 | CDD:395012 | 4/20 (20%) | ||
LY | 1917..1959 | CDD:214531 | |||
FXa_inhibition | 2028..2064 | CDD:405372 | |||
YncE | 2115..>2307 | CDD:225926 | |||
LY | 2188..2231 | CDD:214531 | |||
LY | 2233..2273 | CDD:214531 | |||
FXa_inhibition | 2352..2388 | CDD:405372 | |||
LY | 2465..2506 | CDD:214531 | |||
Ldl_recept_b | 2525..2565 | CDD:395012 | |||
LY | 2551..2591 | CDD:214531 | |||
LY | <2600..2631 | CDD:214531 | |||
FXa_inhibition | 2661..2698 | CDD:405372 | |||
LDLa | 2705..2737 | CDD:197566 | |||
LDLa | 2747..2781 | CDD:238060 | |||
exchanger_TraA | <2748..3136 | CDD:411343 | |||
LDLa | 2912..2944 | CDD:197566 | |||
LDLa | 3000..3034 | CDD:238060 | |||
LDLa | 3039..3070 | CDD:197566 | |||
LDLa | 3082..3116 | CDD:238060 | |||
cEGF | 3139..3162 | CDD:403760 | |||
EGF_CA | 3159..3198 | CDD:214542 | |||
LY | 3226..3268 | CDD:214531 | |||
LY | 3269..3311 | CDD:214531 | |||
Ldl_recept_b | 3340..3380 | CDD:395012 | |||
LY | 3365..3406 | CDD:214531 | |||
LY | 3407..3448 | CDD:214531 | |||
FXa_inhibition | 3476..>3505 | CDD:405372 | |||
LDLa | 3519..3553 | CDD:238060 | |||
LDLa | 3560..3591 | CDD:197566 | |||
LDLa | 3600..3632 | CDD:197566 | |||
LDLa | 3641..3673 | CDD:197566 | |||
LDLa | 3689..3721 | CDD:238060 | |||
LDLa | 3728..3761 | CDD:238060 | |||
LDLa | 3766..3800 | CDD:238060 | |||
LDLa | 3805..3839 | CDD:238060 | |||
LDLa | 3849..3881 | CDD:238060 | |||
LDLa | 3892..3922 | CDD:197566 | |||
LDLa | 3935..3969 | CDD:238060 | |||
EGF_CA | 4014..4054 | CDD:214542 | |||
LY | 4148..4183 | CDD:214531 | |||
Ldl_recept_b | 4204..4244 | CDD:395012 | |||
LY | 4229..4271 | CDD:214531 | |||
FXa_inhibition | 4345..>4363 | CDD:405372 | |||
yl | NP_996433.1 | LDLa | 90..124 | CDD:238060 | 15/33 (45%) |
LDLa | 131..166 | CDD:238060 | 13/59 (22%) | ||
LDLa | 184..216 | CDD:238060 | 13/31 (42%) | ||
LDLa | 227..262 | CDD:238060 | 17/34 (50%) | ||
LDLa | 271..302 | CDD:238060 | 11/30 (37%) | ||
FXa_inhibition | 352..387 | CDD:291342 | 13/41 (32%) | ||
Ldl_recept_b | 442..482 | CDD:278487 | 11/39 (28%) | ||
LY | 466..508 | CDD:214531 | 13/41 (32%) | ||
Ldl_recept_b | 529..569 | CDD:278487 | 17/42 (40%) | ||
LY | 553..595 | CDD:214531 | 16/41 (39%) | ||
LY | 596..637 | CDD:214531 | 13/42 (31%) | ||
FXa_inhibition | 669..700 | CDD:291342 | 10/33 (30%) | ||
LY | 774..815 | CDD:214531 | 16/40 (40%) | ||
LDLa | 1032..1062 | CDD:238060 | 14/29 (48%) | ||
LDLa | 1074..1109 | CDD:238060 | 18/34 (53%) | ||
LDLa | 1118..1152 | CDD:238060 | 15/33 (45%) | ||
LDLa | 1157..1189 | CDD:197566 | 14/31 (45%) | ||
LDLa | 1198..1232 | CDD:238060 | 13/34 (38%) | ||
LDLa | 1243..1279 | CDD:238060 | 13/36 (36%) | ||
LDLa | 1283..1318 | CDD:238060 | 16/34 (47%) | ||
LDLa | 1340..1371 | CDD:197566 | 8/30 (27%) | ||
FXa_inhibition | 1388..1416 | CDD:291342 | 13/27 (48%) | ||
EGF_CA | 1418..1452 | CDD:214542 | 12/33 (36%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100345 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |