Protein Alignment Tubb4a and gammaTub23C

DIOPT Version :9

• Sequence 1: NP_543158.1
• Gene: Tubb4a / 29213
• RGDID: 619730
• Length: 444
• Species: Rattus norvegicus
• Sequence 2: NP_476804.1
• Gene: gammaTub23C / 33501
• FlyBaseID: FBgn0260639
• Length: 475
• Species: Drosophila melanogaster
• Alignment Length: 467
• Identity: 157/467 - (33%)
• Similarity: 269/467 - (57%)
• Gaps: 32/467 - (6%)

  Rat     3 EIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVD 67
            ||:.||.||||||||.:||:.:..||||.|:|.....::..|:|.:|::.:|...:|:|||||:|
  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDVFFYQADDDHYIPRAVLLD 68

  Rat    68 LEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCL 130
            |||..::::....:.:::.|:|....:  .|||||||.| |::|.:|.:.|.|::.:||:..|.|
  Fly    69 LEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSL 132

  Rat   131 QGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDTVVEPYNATLSVHQLVE 194
            :||.|.||:.||||||||:.::.::.:.:|.:::.||||.|: .::||.||:|||:.|::.:|..
  Fly   133 EGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTT 197

  Rat   195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVP 259
            ..|....:||.||..|....|.:..|::..:|:|||..||..||.||:|..:|.:|..|...::|
  Fly   198 AADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIP 262

  Rat   260 FPRLHFFMPGFAPLTSRG---SQQ---YRALTVPELTQQMFDAKNMMAACDP---RHGRYLTVAA 315
            .|:|||.|.|:.||||..   :||   .|..||.::.:::...||||.:..|   .|..|:::..
  Fly   263 TPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILN 327

  Rat   316 VFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQEL 377
            :.:|.:...:|.:.:..::.:..:.|:.|.|.:::.|:....|   ...:::...:.|.|:|..|
  Fly   328 IIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSL 392

  Rat   378 FKRISEQFTAMFRRKAFLHWYTGEGM---DEMEFTEAESNMNDLVSEYQQYQDATAEE------- 432
            |:|...|:..:.:|.|||..:..|.:   |..|..|:...::.||   |:|:.||.|:
  Fly   393 FERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLV---QEYEAATREDYMQFSVK 454

  Rat   433 ---GEFEEEAEE 441
               |..:.::|:
  Fly   455 RGNGPVDSKSED 466

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Tubb4a	NP_543158.1	PLN00220	1..427	CDD:215107	152/441 (34%)
gammaTub23C	NP_476804.1	PLN00222	1..451	CDD:215108	155/450 (34%)
		gamma_tubulin	4..440	CDD:276957	151/439 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5023
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810