Sequence 1: | XP_008758314.1 | Gene: | Sptbn2 / 29211 | RGDID: | 3751 | Length: | 2395 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259165.1 | Gene: | Actn / 31166 | FlyBaseID: | FBgn0000667 | Length: | 917 | Species: | Drosophila melanogaster |
Alignment Length: | 1198 | Identity: | 341/1198 - (28%) |
---|---|---|---|
Similarity: | 499/1198 - (41%) | Gaps: | 359/1198 - (29%) |
- Green bases have known domain annotations that are detailed below.
Rat 1 MSTNGAGRVHGNGLNGAGEFYYEAVEGSQNPGGILLSPAAFINPAQYASVLEGRFKQLQDEREAV 65
Rat 66 QKKTFTKWVNSHLARVTCRVGDLYSDLRDGRNLLRLLEVLSGETLPKPTKGRMRIHCLENVDKAL 130
Rat 131 QFLKEQKVHLENMGSHDIVDGNHRLTLGLVWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQM 195
Rat 196 KTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKL 260
Rat 261 LDPED-VNVDQPDEKSIITYVATYYHYFSKMKALA----------------------VEGKRIGK 302
Rat 303 VLDHAMEAEHLVEKYESLASELLQWIEQTIVTLNDRQLANSLSGVQNQLQSFNSYRTVEKPPKFT 367
Rat 368 EKGNLEVLLFTIQSKLRANNQKVYTPREGRLISDINKAWERLEKAEHERELALRTELIRQEKLEQ 432
Rat 433 LAARFDRKAAMRETWL-SENQRLVSQDNFGLELAAVEAAVRKHEAIETDIVAYSGRVQAVDAVAA 496
Rat 497 ELAAEHYHDIKRIAARQNNVARLWDFLREMVAARR------ERLL-----LNLELQK-------- 542
Rat 543 ---VFQDL--LYLMDWMAEMKGRLQSQDLGKHLAGVEDLLQLHELVEADIAVQAERVRAVSASAL 602
Rat 603 RFCDPGKEYRPCDPQLVSERVATLEQSYEALCELAATRRARLEESRRLWRFLWEVGEAEAWVREQ 667
Rat 668 QHLLASAETGRDLTGVLRLLNKHTALRGEMSGRLGPLKLTLEQGQQLVAEGHPGANQASTRAAEL 732
Rat 733 QAQWERLEALAEERAQRLAQAASLY--------QFQADANDMEAWL---VDALRLVSSPEVGHDE 786
Rat 787 FSTQALARQHRALEEEIRAHRPTLDALREQAAALPPALSHTPEVQGRVPTLEQHYEELQARAGER 851
Rat 852 ARALEAALAFYTMLSEAGACGLWVEEKEQWLNGLALPERLEDLEVVQQRFETLEPEMNALAARVT 916
Rat 917 AVSDIAEQLLKASPPGKDRIIGTQEQLNQRWQQFRSLADGKKAALTSALSIQNYHLECTETQAWM 981
Rat 982 REKTKVIESTQDLGNDLAGVLALQRKLAGTERDLEAISARVGELTQEANALAAGHPAQAPAINTR 1046
Rat 1047 LGEVQTGWEDLRA---TMRRREESLGEARRLQDFLRSL---------DDFQAWLGRTQTAVASE- 1098
Rat 1099 ----EGPATLPEAEALLAQHAALRGEVE 1122 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sptbn2 | XP_008758314.1 | CH | 68..166 | CDD:214479 | 51/97 (53%) |
CH | 184..287 | CDD:237981 | 58/103 (56%) | ||
Spectrin | 312..421 | CDD:278843 | 50/108 (46%) | ||
Spectrin | 436..529 | CDD:278843 | 32/93 (34%) | ||
SPEC | 541..753 | CDD:238103 | 33/224 (15%) | ||
SPEC | 756..965 | CDD:238103 | 36/219 (16%) | ||
SPEC | 968..1179 | CDD:238103 | 29/172 (17%) | ||
SPEC | 1181..1390 | CDD:238103 | |||
SPEC | 1391..1595 | CDD:238103 | |||
SPEC | 1596..1808 | CDD:238103 | |||
SPEC | 1809..2017 | CDD:238103 | |||
SPEC | 2025..>2082 | CDD:197544 | |||
PH_beta_spectrin | 2228..2331 | CDD:269975 | |||
PH | 2249..2331 | CDD:278594 | |||
Actn | NP_001259165.1 | CH_ACTN_rpt1 | 31..135 | CDD:409063 | 54/125 (43%) |
CH_ACTN_rpt2 | 139..252 | CDD:409065 | 65/118 (55%) | ||
SPEC | 302..525 | CDD:238103 | 91/222 (41%) | ||
SPEC | 420..647 | CDD:238103 | 75/345 (22%) | ||
SPEC | 538..760 | CDD:238103 | 58/409 (14%) | ||
EFh | 775..842 | CDD:238008 | 18/115 (16%) | ||
EFhand_Ca_insen | 847..913 | CDD:400872 | 13/65 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D543832at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |