DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sptbn2 and Actn

DIOPT Version :9

Sequence 1:XP_008758314.1 Gene:Sptbn2 / 29211 RGDID:3751 Length:2395 Species:Rattus norvegicus
Sequence 2:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:1198 Identity:341/1198 - (28%)
Similarity:499/1198 - (41%) Gaps:359/1198 - (29%)


- Green bases have known domain annotations that are detailed below.


  Rat     1 MSTNGAGRVHGNGLNGAGEFYYEAVEGSQNPGGILLSPAAFINPAQYASVLEGRFKQLQDEREAV 65
            |..||....:|:|       |.|..|..:..|  ||.||                      .|..
  Fly     2 MMENGLSMEYGDG-------YMEQEEEWEREG--LLDPA----------------------WEKQ 35

  Rat    66 QKKTFTKWVNSHLARVTCRVGDLYSDLRDGRNLLRLLEVLSGETLPKPTKGRMRIHCLENVDKAL 130
            ||||||.|.||||.:....:.::..|.|:|..|:.||||:||||||||.:|:||.|.:.||:|||
  Fly    36 QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL 100

  Rat   131 QFLKEQKVHLENMGSHDIVDGNHRLTLGLVWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQM 195
            .|:..:.|||.::|:.:|||||.::|||::|||||||.||||||      |:.:||:.||||||.
  Fly   101 DFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV------EEMTAKEGLLLWCQR 159

  Rat   196 KTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKL 260
            |||.|.||||.||..|::|||||.|::|:|||||:|:..|.|.|...||..||::|||.|.:.::
  Fly   160 KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKYLDIPRM 224

  Rat   261 LDPED-VNVDQPDEKSIITYVATYYHYFSKMKALA----------------------VEGKRIGK 302
            |||:| :|..:|||::|:|||:.|||.|...:.:.                      ....||.|
  Fly   225 LDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPNNYNAETAANRICK 289

  Rat   303 VLDHAMEAEHLVEKYESLASELLQWIEQTIVTLNDRQLANSLSGVQNQLQSFNSYRTVEKPPKFT 367
            ||....|.|.|:|:||.|||:||:||.:|:..||.||..|||:|||.:|:.:.:||...|||:..
  Fly   290 VLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKLEEYRTYRRKHKPPRVE 354

  Rat   368 EKGNLEVLLFTIQSKLRANNQKVYTPREGRLISDINKAWERLEKAEHERELALRTELIRQEKLEQ 432
            :|..||....|:|:|||.:|:..|.|.||:.:|||:.:|:.||.||...|..|..|.:|.|:||.
  Fly   355 QKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEH 419

  Rat   433 LAARFDRKAAMRETWL-SENQRLVSQDNFGLELAAVEAAVRKHEAIETDIVAYSGRVQAVDAVAA 496
            ||.:|..||...|.|. .:.:.|.|||....:|..::|..:||||.|:|:.|:..||:.:.|:|.
  Fly   420 LAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQ 484

  Rat   497 ELAAEHYHDIKRIAARQNNVARLWDFLREMVAARR------ERLL-----LNLELQK-------- 542
            ||....|||...:.||...:...||.|..:...||      ||:|     |:||..|        
  Fly   485 ELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNW 549

  Rat   543 ---VFQDL--LYLMDWMAEMKGRLQSQDLGKHLAGVEDLLQLHELVEADIAVQAERVRAVSASAL 602
               ..:||  ::::..|.|::|.:|:.|..|...|           |||                
  Fly   550 LDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLG-----------EAD---------------- 587

  Rat   603 RFCDPGKEYRPCDPQLVSERVATLEQSYEALCELAATRRARLEESRRLWRFLWEVGEAEAWVREQ 667
                  ||:         ..:..|                              |.|.|:.|::.
  Fly   588 ------KEF---------NLIVNL------------------------------VREVESIVKQH 607

  Rat   668 QHLLASAETGRDLTGVLRLLNKHTALRGEMSGRLGPLKLTLEQGQQLVAEGHPGANQASTRAAEL 732
            |           :.|.|.  |.:|.|                                  .|.::
  Fly   608 Q-----------IPGGLE--NPYTTL----------------------------------TANDM 625

  Rat   733 QAQWERLEALAEERAQRLAQAASLY--------QFQADANDMEAWL---VDALRLVSSPEVGHDE 786
            ..:|..:..|..:|.|.||......        ||...||.:..|:   :||:..:.....|..|
  Fly   626 TRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIGMGLQGSLE 690

  Rat   787 FSTQALARQHRALEEEIRAHRPTLDALREQAAALPPALSHTPEVQGRVPTLEQHYEELQARAGER 851
            .....|    :..|:.:.|::|.::.|.:...|:..::           ..|..|..        
  Fly   691 DQLHRL----KEYEQAVYAYKPNIEELEKIHQAVQESM-----------IFENRYTN-------- 732

  Rat   852 ARALEAALAFYTMLSEAGACGLWVEEKEQWLNGLALPERLEDLEVVQQRFETLEPEMNALAARVT 916
                      |||                              |.::..:|.|...:|      .
  Fly   733 ----------YTM------------------------------ETLRVGWEQLLTSIN------R 751

  Rat   917 AVSDIAEQLLKASPPGKDRIIGTQEQLNQRWQQFRSLADGKKAALTSALSIQNYHLECTETQAWM 981
            .::::..|:|.....|.     :|||||    :|||..:......|..||.:.:           
  Fly   752 NINEVENQILTRDSKGI-----SQEQLN----EFRSSFNHFDKNRTGRLSPEEF----------- 796

  Rat   982 REKTKVIESTQDLGNDLAGVLALQRKLAGTERDLEAISARVGELTQEANALAAGHPAQAPAINTR 1046
              |:.::.....:|.|..|.|..||.||..:.:                                
  Fly   797 --KSCLVSLGYSIGKDRQGDLDFQRILAVVDPN-------------------------------- 827

  Rat  1047 LGEVQTGWEDLRA---TMRRREESLGEARRLQDFLRSL---------DDFQAWLGRTQTAVASE- 1098
                .||:....|   .|.|.......|.::.|..|.|         |:.:..|...|.....: 
  Fly   828 ----NTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILPDELRRELPPDQAEYCIQR 888

  Rat  1099 ----EGPATLPEAEALLAQHAALRGEVE 1122
                :||..:|.|...::...||.||.:
  Fly   889 MPPYKGPNGVPGALDYMSFSTALYGETD 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sptbn2XP_008758314.1 CH 68..166 CDD:214479 51/97 (53%)
CH 184..287 CDD:237981 58/103 (56%)
Spectrin 312..421 CDD:278843 50/108 (46%)
Spectrin 436..529 CDD:278843 32/93 (34%)
SPEC 541..753 CDD:238103 33/224 (15%)
SPEC 756..965 CDD:238103 36/219 (16%)
SPEC 968..1179 CDD:238103 29/172 (17%)
SPEC 1181..1390 CDD:238103
SPEC 1391..1595 CDD:238103
SPEC 1596..1808 CDD:238103
SPEC 1809..2017 CDD:238103
SPEC 2025..>2082 CDD:197544
PH_beta_spectrin 2228..2331 CDD:269975
PH 2249..2331 CDD:278594
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 54/125 (43%)
CH_ACTN_rpt2 139..252 CDD:409065 65/118 (55%)
SPEC 302..525 CDD:238103 91/222 (41%)
SPEC 420..647 CDD:238103 75/345 (22%)
SPEC 538..760 CDD:238103 58/409 (14%)
EFh 775..842 CDD:238008 18/115 (16%)
EFhand_Ca_insen 847..913 CDD:400872 13/65 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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