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Protein Alignment Cdh9 and CadN2

DIOPT Version :9

Sequence 1:	NP_001162101.1	Gene:	Cdh9 / 29163	RGDID:	1308343	Length:	788	Species:	Rattus norvegicus
Sequence 2:	NP_001036368.2	Gene:	CadN2 / 35071	FlyBaseID:	FBgn0262018	Length:	1799	Species:	Drosophila melanogaster

Alignment Length:	888	Identity:	216/888 - (24%)
Similarity:	353/888 - (39%)	Gaps:	283/888 - (31%)

- Green bases have known domain annotations that are detailed below.

  Rat    20 DNSP----------LQGKDNIHLRKRIVNLKKDDGKMLHRTKRGWMWNQFFLLEEYTGTDTQYVG 74
            ||.|          :..:|:.:|.|||:.:...||
  Fly   131 DNPPVFDRQTYRTQITEEDDRNLPKRILQVTATDG------------------------------ 165

  Rat    75 KLHTDQDKGDGNLKYILTGDG------AGNLFVIDENTGDIHAAKKLDREEKSLYILRAKAIDRK 133
                |.|: ..|:.|.|||.|      |.:.|.|:..||||...|.|||             |:.
  Fly   166 ----DVDR-PINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDR-------------DQP 212

  Rat   134 TGRQVEPESEFI------------------IKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQV 180
            .||   |:..|.                  :.:.|||||.|:|.:.:|..:|.|....|:||:.:
  Fly   213 NGR---PQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTM 274

  Rat   181 TATDADDANYGNSAKVVYSILQ-------GQPYFSVDPESGIIKTALPDMSRENREQYQVVIQAK 238
            :|.|.||.|...:||::|||.:       |.|.|.::||:|:||||:..:.||....|.:.:.|.
  Fly   275 SAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAM 339

  Rat   239 DMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSLESAPLGTHLGR-----IKANDPDTGE 298
            |    .|||.||.|.:|.:.|:|:.||:|.:..:.....|:.  ||::..     :...|.|  |
  Fly   340 D----GGGLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDETN--GTYIPETPILTVTVQDED--E 396

  Rat   299 NAELEYSI--SEGEGSDMFDVITDKDTQEGIITVKQNLDFEKKML---YTLRVDASNTHPDPRFL 358
            ....:|.:  :.|.|:|.|.::.:.| ..|.:.:.|.||:|..:.   :..|:..::...|
  Fly   397 TNTFQYKVVPNSGFGADKFAMVRNGD-GTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD---- 456

  Rat   359 HLGPFKDS------AMVKISVEDV-DEPPVFSKLSYLMEVDEDVKEGSIIGQVTAYDPD-AMNNI 415
              ||....      :.|.:.:.|: |..|.|.:....:.:.||.|.|:|:.|..|.|.| ..::.
  Fly   457 --GPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSK 519

  Rat   416 IKYSVDRHTDMDRVFSIHSENGSIFTLKPLDRESSPWHNITVTATEINNPKQSSQIAVFIRILDI 480
            :.|.:.|.|:..|.|:| |:.|::...:|||||:...|:|.:.|.:..:|.:::...:.:.:.|:
  Fly   520 VAYKIVRSTNRKRQFAI-SDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDV 583

  Rat   481 NDHAPEFAMYYETFVCENAKSGQLIQTISVMDKDDPPRGH----KFFFEPVPEFPLNPNFTIV-- 539
            ||:||.||..|:..:.||. ||:.|..::..|.||..||:    .|..:|:....:...|.:.
  Fly   584 NDNAPTFAQDYKPTLPENV-SGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYD 647

  Rat   540 ---DNKDNTAGIITRKDGYSRNKMNTYLLPVLIFDNDYPIQSSTGTLTIRVCACDNQGNMQSCNA 601
               || :|...||:....:.|....:|.:|:.|.||..|..:.|.|||:.:
  Fly   648 RRGDN-ENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTI-------------- 697

  Rat   602 EALMLAAGLSTGALIAILLCVVILLTLIVLFAALKRQRKKEPLIISKDDVRDN--------IVTY 658
                                                           .||.||        ::.|
  Fly   698 -----------------------------------------------GDVNDNKMQPGSKSVLVY 715

  Rat   659 NDEGGGEEDTQAFDIGT--LRNPEAREDSKLRRDVMPETIFQIRRTVPLWENIDVQDFIHRRLKE 721
            |.:|    .:|...||.  :.:|:..:        :|:..:       .||   ||:  |:|.|
  Fly   716 NYQG----QSQDTPIGRVYVNDPDDWD--------VPDKKY-------YWE---VQE--HQRFK- 755

  Rat   722 NDSDPSA----------------PPYDSLATYAYEGNDSVANSLS-SLESLTADCNQ-------- 761
            .|:|...                ..||     ...|.:.:..:|| ::..:||:..|
  Fly   756 LDTDTGILTMRAGTRRGRYQLRFKVYD-----REHGQEDIPANLSVTVRDITAEAVQQAGSMRLS 815

  Rat   762 ---DYDYLSDWGP-----------RFK-KLAE-MYGGDDSDRD 788
               |.|::..|.|           ||: |||| :|    :|||
  Fly   816 HITDEDFVRTWNPVKNQVEPSKLERFRNKLAELLY----TDRD 854

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.