DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdh7 and CadN2

DIOPT Version :9

Sequence 1:NP_001012755.1 Gene:Cdh7 / 29162 RGDID:1306856 Length:785 Species:Rattus norvegicus
Sequence 2:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster


Alignment Length:746 Identity:213/746 - (28%)
Similarity:340/746 - (45%) Gaps:157/746 - (21%)


- Green bases have known domain annotations that are detailed below.


  Rat    66 LYVGKLHSDVDKGDGFIKYILSGEG------ASSIFIIDENTGDIHATKRLDREE-----QAYYT 119
            |.|.....|||:....: |.|:|:|      |:|.|.|:..||||...|.|||::     |..:|
  Fly   158 LQVTATDGDVDRPINIV-YFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFT 221

  Rat   120 LRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPT 184
            :.||  |. ..:.:...::..:.::|||||.|:|..|.|...|.|....|:||:.::|.|.|||.
  Fly   222 VFAQ--DE-GGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPN 283

  Rat   185 YGNSARVVYSILQ-------GQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGL 242
            ...:|:::|||.:       |.|.|.:||:||:||||:..:|||....|.:.:.|.|    .|||
  Fly   284 ESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMD----GGGL 344

  Rat   243 SGTTSVTVTLTDVNDNPPRFPRRSY-----QYNG---PESLPVASVVARIKAADADIGVNAEMEY 299
            .||.:.::.:.|:||.||:|.:..:     :.||   ||: |:.:|..:      |.......:|
  Fly   345 KGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPET-PILTVTVQ------DEDETNTFQY 402

  Rat   300 KIVDGDGLGIFKISPDKDTQ-EGIITIQKELDFE---AKTSYTLRIEAANRDADPRFLSLGP-FS 359
            |:|...|.|..|.:..::.. .|.:.|.:.||:|   ..:.:..||:..::..|      || .|
  Fly   403 KVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD------GPGGS 461

  Rat   360 DT-----TTVKIIVEDV-DEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPD-SSNSPVRYSIDR 417
            |.     :.|.:.:.|: |..|.|......:.:.|.|:||.|:....|.|.| ..:|.|.|.|.|
  Fly   462 DKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR 526

  Rat   418 NTDLERYFNIDANSGIITTAKSLDRETNPVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEF 482
            :|:.:|.|.| ::.|.::..:.|||||...|:|.:||::..:|::.....:.:.:.|:|||||.|
  Fly   527 STNRKRQFAI-SDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTF 590

  Rat   483 AMDYETTVCENAQPGQVIQKISAIDKDE--PSNGHQFYFSLTTDMANNLNSSLK-------DNKD 538
            |.||:.|:.||.. |:.|.:::|.|.|:  ..||..|.|.|....::.:.:..|       || :
  Fly   591 AQDYKPTLPENVS-GKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDN-E 653

  Rat   539 NTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTNTLTIRVCDCDADG--------IAQTCN 595
            |..:|::....|.|:.|..|.:||.|.|||:|:::.|:|||:.:.|.:.:.        :.....
  Fly   654 NGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQ 718

  Rat   596 AEAYILPAG------------------------------LSTGALIAILACVLTLLVLILLIVTM 630
            .::...|.|                              ..||                  |:||
  Fly   719 GQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTG------------------ILTM 765

  Rat   631 K---RRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPE-IQ 691
            :   ||.:..|.|..          ||.| .|:||..|       ||:|     |.||:|.| :|
  Fly   766 RAGTRRGRYQLRFKV----------YDRE-HGQEDIPA-------NLSV-----TVRDITAEAVQ 807

  Rat   692 FLSRPTFKNIPDNVIFREFIWERLKEADVDP 722
            ........:|.|....|  .|..:|. .|:|
  Fly   808 QAGSMRLSHITDEDFVR--TWNPVKN-QVEP 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdh7NP_001012755.1 CA 73..151 CDD:214520 29/88 (33%)
Cadherin_repeat 157..258 CDD:206637 39/107 (36%)
Cadherin_repeat 266..373 CDD:206637 27/125 (22%)
Cadherin_repeat 382..478 CDD:206637 30/96 (31%)
Cadherin_repeat 486..584 CDD:206637 34/106 (32%)
Cadherin_C 639..777 CDD:279398 24/85 (28%)
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 29/93 (31%)
Cadherin_repeat 256..359 CDD:206637 38/106 (36%)
Cadherin_repeat 379..481 CDD:206637 25/114 (22%)
Cadherin_repeat 489..586 CDD:206637 30/97 (31%)
Cadherin_repeat 594..703 CDD:206637 35/110 (32%)
Cadherin_repeat 724..801 CDD:206637 23/117 (20%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5067
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24027
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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