DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GRIK5 and Ir68a

DIOPT Version :9

Sequence 1:XP_011525167.1 Gene:GRIK5 / 2901 HGNCID:4583 Length:982 Species:Homo sapiens
Sequence 2:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster


Alignment Length:642 Identity:123/642 - (19%)
Similarity:222/642 - (34%) Gaps:205/642 - (31%)


- Green bases have known domain annotations that are detailed below.


Human   355 YDGLTGRVEFNSKGQ--------RTNYTLRILEKSR-------------------------QGHR 386
            ||    |:.|.|.|:        |||.:..:...||                         |..|
  Fly    66 YD----RIFFESVGRRVIPFFVMRTNESDDLQRPSRQVELFVKAIKSSDCELNVITILNGWQVQR 126

Human   387 EIGVWYSNRTLAMN--------------------ATTLD-INLSQTLANK----TLVVTTILENP 426
            .:|..|.||:|.|.                    :..:| |.|.:.|.||    |:....||...
  Fly   127 FLGYIYDNRSLNMQKKFVLLHDLRLFESDMIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILSGV 191

Human   427 YVMRR-PNFQ---ALSG--------------------------------NERFEGFCVDMLRELA 455
            .||:. .|::   .|:|                                .:.|:|..|:::..|.
  Fly   192 LVMKNIANWELGKGLNGRILFADKTSNLFGTSLPVAISEHVPMVLWANATKSFQGVEVEIMNALG 256

Human   456 ELLRFR---YRLRLVE-------DG----LYGAPEPNG-SWTG-----MVGELINRQKADLAVAA 500
            :.|.|:   |:....|       ||    .||:..|:| :..|     |:.:.:....|..|:..
  Fly   257 KALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGD 321

Human   501 FTITAEREKVIDFSKP-------FMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAV 558
            ..:.....|:::.|.|       |:|        ........:.:|:.|||..:|:.:||:...|
  Fly   322 LHLFQVYLKLVELSAPHNFECLTFLT--------PESSTDNSWQTFILPFSAGMWVGVLLSLFVV 378

Human   559 SCVLFLAARLSPY-------EWYNPHPCLRAR------------------------------PHI 586
            ..|.:..:.|:..       |::.   |||..                              |..
  Fly   379 GTVFYAISFLNAIINGNVSSEFFR---CLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRD 440

Human   587 LENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEV 651
            |.:.||  |.:.......:......|||....|.::|.:|.:.::::::|.|:..|.|......|
  Fly   441 LFDGYT--NCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARV 503

Human   652 PVESADDLADQTNIEYGTIHAGST--MTFFQNSRYQTYQRMWNYMQSKQPSVFVKSTEEGIARVL 714
            .:::.:||. :::|...|   |:|  ..||..:..:..:::...|:     ||..| ::..:|:.
  Fly   504 TIDTLEDLL-RSHIPPST---GATENRQFFLEANDEVARKVGEKME-----VFGYS-DDLTSRIA 558

Human   715 NSRYAFLLESTMNEYHRRLNCNLTQIGGLLD-TKGYGIGMPL------GSPFRDEITLAILQLQE 772
            ..:.|:.    .||::.|......:.|..|. .|...:.||:      .|..:..:..:|..|.|
  Fly   559 KGQCAYY----DNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAE 619

Human   773 NNRLEILKRKWWEGG--RCPKEEDHRAKGL-GMENIGGIFIVLICGLIIAVFVAVME 826
            ..    |..||.:..  ..|.|...:.:.| .::.....|:.|:.|.:|::...:.|
  Fly   620 GG----LIAKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLLAE 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIK5XP_011525167.1 PBP1_iGluR_Kainate_KA1_2 25..399 CDD:107389 18/76 (24%)
ANF_receptor 42..379 CDD:279440 9/31 (29%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:304360 92/483 (19%)
Lig_chan 546..816 CDD:278489 60/318 (19%)
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 50/251 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155891
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.