DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GRIK5 and Ir25a

DIOPT Version :9

Sequence 1:XP_011525167.1 Gene:GRIK5 / 2901 HGNCID:4583 Length:982 Species:Homo sapiens
Sequence 2:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster


Alignment Length:923 Identity:233/923 - (25%)
Similarity:402/923 - (43%) Gaps:182/923 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    51 INGIIEVPAKARVEVDIFELQRDSQY---------ETTDTMCQILPKGVVS-------------- 92
            ||.:...||...|||.:..|:::.:|         |...:..::|.:.:.:              
  Fly    41 INEVDNEPAAKAVEVVLTYLKKNIRYGLSVQLDSIEANKSDAKVLLEAICNKYATSIEKKQTPHL 105

Human    93 VLGPSSSPASASTVSHICGEKEIPHIKV--GPE---------ETPRLQYLRFASVSLYPSNEDVS 146
            :|..:.|..::.||........:|.|..  |.:         :..:.:||    :.:.|..:.:.
  Fly   106 ILDTTKSGIASETVKSFTQALGLPTISASYGQQGDLRQWRDLDEAKQKYL----LQVMPPADIIP 166

Human   147 LAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKV 211
            .|:..|:...|..:|:::...:..:....:.:...:.::..::....|..|:....::::|:..:
  Fly   167 EAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQNIQTRHVITAIAKDGKREREEQIEKLRNLDI 231

Human   212 STIIIDANASISHLILRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFNTSHPF 276
            :...|........::|...........|..:.:|..:..|    ....|::.|:  .|...::..
  Fly   232 NNFFILGTLQSIRMVLESVKPAYFERNFAWHAITQNEGEI----SSQRDNATIM--FMKPMAYTQ 290

Human   277 YPEFVRSLNMSWRENCEASTYLGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWP 341
            |.:.:..|..::..|.|      |.||:|..||........::|:.:|             ..||
  Fly   291 YRDRLGLLRTTYNLNEE------PQLSSAFYFDLALRSFLTIKEMLQS-------------GAWP 336

Human   342 HGTSLMNYLRMVEYDG-------LTGRVEFNSKGQRTNY-TLRILEKSRQ---GH---------- 385
            ..   |.||...::.|       |..|..|....:.|:| |..::.:|.|   ||          
  Fly   337 KD---MEYLNCDDFQGGNTPQRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDIN 398

Human   386 ------------REIGVWYSNRTLAMNATTL---DINLSQTLANKTLVVTTILENPYVMRRPNFQ 435
                        :.||.|.|    .:|:..:   :..:....|:....:.|:::.|::||..   
  Fly   399 VLQIRGGSSVNSKSIGKWIS----GLNSELIV
KDEEQMKNLTADTVYRIFTVVQAPFIMRDE--- 456

Human   436 ALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELINRQKADLAVAA 500
              :..:.::|:|:|::.|:|.::.|.|.::.||||.:|..:.||.|.|:|.:|:::| ||:.:.:
  Fly   457 --TAPKGYKGYCIDLINEIAAIVHFDYTIQEVEDGKFGNMDENGQWNGIVKKLMDKQ-ADIGLGS 518

Human   501 FTITAEREKVIDFSKPFMTL-GISILYRVHMGRKP----GYFSFLDPFSPAVWLFMLLAYLAVSC 560
            .::.||||.||||:.|:..| ||:|     |.::|    ..|.||......|||.:|.||...|.
  Fly   519 MSVMAEREIVIDFTVPYYDLVGITI-----MMQRPSSPSSLFKFLTVLETNVWLCILAAYFFTSF 578

Human   561 VLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVW 625
            ::::..|.|||.:.|...  :.:....:.::.|...|||.:.....||....|:.||.|.|:..|
  Fly   579 LMWIFDRWSPYSYQNNRE--KYKDDEEKREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATW 641

Human   626 WAFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSR------Y 684
            |.|..|||:||||||||||||.|::.||||.||||.|..|.|..::..|.||:|:...      |
  Fly   642 WLFGFIIIASYTANLAAFLTVSRLDTPVESLDDLAKQYKILYAPLNGSSAMTYFERMSNIEQMFY 706

Human   685 Q----------------------------TYQRMWNYMQ-SKQPSVFVKSTEEGIARVLNSR--- 717
            :                            .|.:||..|| :|.|:    :.:|.:|||.||.   
  Fly   707 EIWKDLSLNDSLTAVERSKLAVWDYPVSDKYTKMWQAMQEAKLPA----TLDEAVARVRNSTAAT 767

Human   718 -YAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKR 781
             :|||.::|...|.:..||:|..:|.....|.|.|.:..||..:|:...|||.|....:||.||.
  Fly   768 GFAFLGDATDIRYLQLTNCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKE 832

Human   782 KWWEG----GRCPKEEDHRAKGLGMENIGGIFIVLICGLIIAVFVAVMEFIWSTRR--------- 833
            |||:.    .:|.|.|| ::.|:.::||||:|||:..|:.:|....|.|:.|...|         
  Fly   833 KWWKNDEALAKCDKPED-QSDGISIQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRIIDVA 896

Human   834 SAESEETPAL-HP 845
            .|.:|.:.|. ||
  Fly   897 EANAERSNAADHP 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIK5XP_011525167.1 PBP1_iGluR_Kainate_KA1_2 25..399 CDD:107389 68/414 (16%)
ANF_receptor 42..379 CDD:279440 60/369 (16%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:304360 139/414 (34%)
Lig_chan 546..816 CDD:278489 109/312 (35%)
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 69/420 (16%)
PBP2_iGluR_putative 438..836 CDD:270435 139/414 (34%)
Lig_chan 565..870 CDD:278489 109/311 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156282
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.