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Protein Alignment Nvl and TER94

DIOPT Version :9

Sequence 1:	NP_001099450.1	Gene:	Nvl / 289323	RGDID:	1311270	Length:	855	Species:	Rattus norvegicus
Sequence 2:	NP_001097249.1	Gene:	TER94 / 36040	FlyBaseID:	FBgn0286784	Length:	826	Species:	Drosophila melanogaster

Alignment Length:	625	Identity:	260/625 - (41%)
Similarity:	375/625 - (60%)	Gaps:	68/625 - (10%)

- Green bases have known domain annotations that are detailed below.

  Rat   250 KAKSTELQISSVKFEDVGGNDATLKEVCKML-IHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLL 313
            |.:..|..:::|.::|:||....|.::.:|: :.:|||.:::.:||.||||:|::||||.||||:
  Fly   212 KREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLI 276

  Rat   314 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCIVFIDEIDAITPKREVASKD 378
            |.|:|.|.......:..|||:|.::||||..||..|::|..|:|.|:||||||||.|||:....:
  Fly   277 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGE 341

  Rat   379 MERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSLDPALRRAGRFDREVCLGIPDEASRERIL 443
            :|||||:||||.||.:..   ::.::|:.|||||:|:||||||.||||||:.:||||...|..:|
  Fly   342 VERRIVSQLLTLMDGMKK---SSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVL 403

  Rat   444 QTLCRKLRLPETFNFSHLAHLTPGFVGADLMALCREAAVCAVHRVLMRRQEQQRTEPETGGLPSD 508
            :...:.::|.:..:...:|..:.|.|||||.:||.|||:           :|.|
  Fly   404 RIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAAL-----------QQIR----------- 446

  Rat   509 GEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQMQGLCLELNDFIVALSEVQPSAKREGFVT 573
                             |...|:.|  :.|.|..|.:..|.:.:.:|..|:::..|||.||..|.
  Fly   447 -----------------EKMDLIDL--EDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVE 492

  Rat   574 VPNVTWADVGALEDIREELTMAILAPVRNPEQFRALGLVAPAGVLLAGPPGCGKTLLAKAVANES 638
            |||.||.|:|.||.:::||...:..||.:|::|...|:....|||..|||||||||||||:|||.
  Fly   493 VPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC 557

  Rat   639 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRV 700
            ..|||||||||||.|:.||||..||.:|.:|:::||||:||||:|::...|...   ..||:.||
  Fly   558 QANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRV 622

  Rat   701 VNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGT 765
            :||:||||||:..::.|||:.|||||||||||||||||||:.:::.||....|.||||.   |..
  Fly   623 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKA---NLR 684

  Rat   766 KPPLDEDVDLEAIANDHRCDCYTGADLSALVREASLCALRQEITGQ--------KNGIGTAEL-- 820
            |.||.::|||..||.  ....::||||:.:.:.|...|:||.|..:        :|.....::
  Fly   685 KSPLAKEVDLTYIAK--VTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDE 747

  Rat   821 -----TVSHKHFEEAFRKVKPSISVKDQRMYEALQRSLSQ 855
                 .::..|||||.:..:.|:|..|.|.||...::|.|
  Fly   748 DDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 787

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.