DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GRIA3 and Ir76a

DIOPT Version :10

Sequence 1:NP_000819.4 Gene:GRIA3 / 2892 HGNCID:4573 Length:894 Species:Homo sapiens
Sequence 2:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster


Alignment Length:197 Identity:43/197 - (21%)
Similarity:79/197 - (40%) Gaps:29/197 - (14%)


- Green bases have known domain annotations that are detailed below.


Human   492 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAY 553
            |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359

Human   554 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWF----SLG 614
            .:|||::...:..|:.|.:..|     |.           .|.....|.:  .:||.|    :|.
  Fly   360 VLWMCVMLCLLLESLALGITRR-----WE-----------HSSVAAGNSW--ISSLRFGCISTLK 406

Human   615 AFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAY 679
            .|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||:..:....:|.:.|.....|..
  Fly   407 LFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWT 471

Human   680 GT 681
            ||
  Fly   472 GT 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA3NP_000819.4 PBP1_iGluR_AMPA_GluR3 35..409 CDD:380610
PBP2_iGluR_AMPA 422..805 CDD:270433 43/197 (22%)
Ir76aNP_001097647.3 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.