DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRIA3 and Ir7c

DIOPT Version :10

Sequence 1:NP_000819.4 Gene:GRIA3 / 2892 HGNCID:4573 Length:894 Species:Homo sapiens
Sequence 2:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster


Alignment Length:498 Identity:97/498 - (19%)
Similarity:180/498 - (36%) Gaps:130/498 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   425 IVVTTILESPYVMYKKNHEQLEGNERY--EGYCVDLAYEIAKHVRIKYKL---------SIVGDG 478
            :||.|....|||:.:.:.:...|...:  ||.   :...:|:.:....||         .|:.||
  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKLVEQKDKNRGEILPDG 277

Human   479 KYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG 543
            .:          .|::..:|.|..::.......:..|.:::..|..:.|..|.:::.......| 
  Fly   278 NF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP- 331

Human   544 VFSFLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSP--YEWHLEDNNEEPRDPQSPPDPPNEFGI 605
            :.....|..|.||.||:.:.| |..::..|.....|  ....|...|..|               
  Fly   332 MGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALPGLRNLVLGRRNRLP--------------- 381

Human   606 FNSLWFSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES- 667
            |..:|.||  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:| 
  Fly   382 FMGMWASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSL 441

Human   668 AEDLAKQTEI----AYGTL--DSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVR 726
            :|.|||..|.    |..|:  ||..|..|  .:.:::.|.::......:|.:   |.|       
  Fly   442 SEVLAKDYEFRILPALRTIFKDSMPTTNF--HAVLSLEESLYRLRDEDDPGI---TVA------- 494

Human   727 KSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP-------------KGSALRNAV 778
                    ||:.|:|::..:..|           :|.:....|             ..|..:..:
  Fly   495 --------LLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAPLTFYMRPHSYFKRRI 540

Human   779 NLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVAL 843
            :..::.:...|::.:.: |.:.|:.:..|...:.:.|  .||:..::|:|....|...:|::|.:
  Fly   541 DRLIMAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIFVCCAGLYLVALIVFI 602

Human   844 IEFCYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNV 886
            :|..                          |.|:...|..:||
  Fly   603 LEIL--------------------------TTNHRRLRRAFNV 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA3NP_000819.4 PBP1_iGluR_AMPA_GluR3 35..409 CDD:380610
PBP2_iGluR_AMPA 422..805 CDD:270433 82/415 (20%)
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 13/74 (18%)
Lig_chan 343..592 CDD:459656 63/302 (21%)
Blue background indicates that the domain is not in the aligned region.

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