DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRIA3 and Ir7b

DIOPT Version :10

Sequence 1:NP_000819.4 Gene:GRIA3 / 2892 HGNCID:4573 Length:894 Species:Homo sapiens
Sequence 2:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster


Alignment Length:426 Identity:80/426 - (18%)
Similarity:150/426 - (35%) Gaps:101/426 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   491 NGMVGELVYG-RADIAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSFLD-P 550
            :|.:.:.::| .||.::............|.:|:.   |||   .||:....:|....:..|. |
  Fly   269 SGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEKLSFP 330

Human   551 LAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGA 615
            ....:|..|....|...::|.|:.|     |  ..::|.||:|           .:..|..::|.
  Fly   331 FTPLLWRAIGLVLILACLLLMLLVR-----W--RHHHELPRNP-----------YYELLVLTMGG 377

Human   616 FMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYG 680
            .::...  .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.::..::..|    :.
  Fly   378 NLEDRW--VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ----HF 436

Human   681 TLDSGSTKEFFRRSKIAVYE---KMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNE 742
            |:......|  .|...::.|   :...|::.:|...|     ..:|:...|..:.|.|   |..|
  Fly   437 TIQLAEVNE--ARILASLPELRPEQLVYLEGSELQSF-----PALAQQSGSSARVAIL---TPYE 491

Human   743 YIEQRKPCDTMK-----VGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDK 802
            |....:....|.     |...:.::.......:.|.|...:|..:...:..|.|:....::    
  Fly   492 YFGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQY---- 552

Human   803 GECGSGGGDSKDKTSA-----------------------------------LSLSNVAGVFY-IL 831
                ....|.||::.|                                   ||:..:|.:|: ||
  Fly   553 ----VSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLIL 613

Human   832 VGGLGLAMMVALIEFCYKSRAESKRMKLTKNTQNFK 867
            ...|| |::|.::|...      .|:||.|..:..|
  Fly   614 WANLG-AVVVFVLELLL------PRIKLRKILRKMK 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA3NP_000819.4 PBP1_iGluR_AMPA_GluR3 35..409 CDD:380610
PBP2_iGluR_AMPA 422..805 CDD:270433 60/326 (18%)
Ir7bNP_572410.2 None
Blue background indicates that the domain is not in the aligned region.

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