DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRIA2 and Ir10a

DIOPT Version :10

Sequence 1:NP_000817.5 Gene:GRIA2 / 2891 HGNCID:4572 Length:883 Species:Homo sapiens
Sequence 2:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster


Alignment Length:410 Identity:87/410 - (21%)
Similarity:154/410 - (37%) Gaps:79/410 - (19%)


- Green bases have known domain annotations that are detailed below.


Human   471 YGARDADTKIWNGMVGELVYGKADIAIAPLTIT--LVREEVIDFSKPFMSLGISIMIKK----PQ 529
            :|.|.|:.. :||.:|.::....||.:....:.  || ::.:||:.......:.|.:.|    ||
  Fly   246 FGERSANGS-YNGAIGSIIKDGLDICLTGFFVKDYLV-QQYMDFTVAVYDDELCIYVPKASRIPQ 308

Human   530 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFED--------GRETQSS 586
            ...| :|:    :.|:||:..|......:::           |.|....:        |.:....
  Fly   309 SILP-IFA----VGYDIWLGFVLTAFACALI-----------WLTLRVINLKLRIVSLGNQHIVG 357

Human   587 ESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 651
            ::   .||....|.   .:::......|.|.:.|:..|.....::|..:.:.::||.........
  Fly   358 QA---LGIMVDTWV---VWVRLNLSHLPASYAERMFIGTLCLVSVIFGAIFESSLATVYIHPLYY 416

Human   652 SPIESAEDLSKQ-TEIAYGTLDSGSTKEFFRRSK--IAVFDKMWTYMRSAEPSVFVRTTAEGVAR 713
            ..|.:.::|.:. .::.| ...|.:...||..:.  .|..:|..::.|.....|.     :.|||
  Fly   417 KDINTMQELDESGLKVVY-KYSSMADDLFFSETSPLFASLNKKLSWNRDLRADVI-----DEVAR 475

Human   714 VRKSKGKYAY---LLES---TMNEYIEQRKPCDTMKVGGNLDSKGYGIA--TPKGSSLRTPVNLA 770
            .|...|...|   :|||   |:...|.....|          .|.|.|:  .|:.|.....||..
  Fly   476 FRNKAGVSRYTSLILESSHFTLLRKIWVVPEC----------PKYYTISYVMPRDSPWEDAVNAL 530

Human   771 VLKLSEQGVLDK--LKNKWWYD---KGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLV 830
            :|:....|::.|  ...|.|.|   :......|:.| |....|::.::...||:::||..||.|.
  Fly   531 LLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADAES-ELVRVLTIGDLQLAFYVVIGGNLLAFLG 594

Human   831 ALIEFCYKSRAEAKRMKVAK 850
            .|        ||..|.|:.|
  Fly   595 FL--------AEHFRWKLQK 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA2NP_000817.5 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612
PBP2_iGluR_AMPA 413..794 CDD:270433 70/352 (20%)
Required for interaction with IQSEC1. /evidence=ECO:0000250|UniProtKB:P19491 867..877
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 12/49 (24%)
Blue background indicates that the domain is not in the aligned region.

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