DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmcn1 and dpr13

DIOPT Version :9

Sequence 1:NP_001258221.1 Gene:Hmcn1 / 289094 RGDID:1564772 Length:5635 Species:Rattus norvegicus
Sequence 2:NP_001033956.2 Gene:dpr13 / 3885598 FlyBaseID:FBgn0034286 Length:419 Species:Drosophila melanogaster


Alignment Length:414 Identity:90/414 - (21%)
Similarity:132/414 - (31%) Gaps:156/414 - (37%)


- Green bases have known domain annotations that are detailed below.


  Rat  4063 PAGTAL-----GKIKLNVQVPPA------------ISSHQKEYVVTMDKPVSLLCETEGSPPPDI 4110
            ||.:.|     |::...:|.|.|            |..|.........|.|:....|..|.|.  
  Fly     2 PASSGLYRIKNGRVLDRLQKPAALIFIIAYIAACGICDHTASASPGGGKTVAATMTTPASEPS-- 64

  Rat  4111 TWHKDGHALTESIRQRILNSGALQ---IAFAQPDDAGQYTCMAANMAGSSSMS------------ 4160
                     ...|.|.::.|.:.:   :...||     |...||:..|||..|            
  Fly    65 ---------VRHINQNLIMSQSKEGEPVPVPQP-----YAQSAASAGGSSITSFDSTNVIDGQSQ 115

  Rat  4161 --------TTLTVHVPPRIQSTE--------VH---------------------------YTVNE 4182
                    ..|..|...|||:.:        ||                           |...|
  Fly   116 PTPTHLQEAVLQTHSHSRIQAKDTAGPYPIPVHRPEPVENHLEANNGIEGGMESLFGTPMYFGTE 180

  Rat  4183 NSQVV---------LPCVADGIPTPAIHW--ERDSVLLANLLGKYTAQ--------PYGE---LV 4225
            ||.||         :||....|....:.|  ::|..||...|..|::.        .:.|   |.
  Fly   181 NSTVVTTQIGATAHVPCTVHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSEDWTLQ 245

  Rat  4226 LENVVLEDAGTYTCVANNAAGEDTH---TVTLTVHALPTFTELPGD--LSLNKGEQLRLSCKAVG 4285
            ::.|.|.|||.|.|..:      ||   ::.|.:..:....|:.|.  ..|..|..|||.|:.|.
  Fly   246 IKFVQLRDAGVYECQVS------THPPTSIFLHLSVVEARAEITGPPIRYLTPGSTLRLQCRVVQ 304

  Rat  4286 IPLPK--LTWTFNNNIIPAHFDSVNG----------HSELVIEKVSKEDSGTYVCTAENSVGFVK 4338
            .....  :.|..:|.:|  ::|...|          .|||.|::..:|.||.:.|.|.|:     
  Fly   305 NTEASEYIFWYHDNRMI--NYDIDRGINVSTEPDFQSSELTIQRTRREHSGNFTCVASNT----- 362

  Rat  4339 AIGFVYVKEPP-----VFKGDYPS 4357
                    :|.     :||||.|:
  Fly   363 --------QPASVLVHIFKGDNPA 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmcn1NP_001258221.1 VWA_2 42..212 CDD:290253
I-set 520..608 CDD:254352
ig 524..606 CDD:278476
I-set 612..696 CDD:254352
Ig 626..696 CDD:299845
I-set 702..789 CDD:254352
Ig 716..789 CDD:299845
Ig 792..884 CDD:299845
IG_like 799..884 CDD:214653
I-set 890..977 CDD:254352
IGc2 903..967 CDD:197706
Ig 980..1071 CDD:299845
IG 994..1068 CDD:214652
I-set 1085..1167 CDD:254352
Ig 1086..1167 CDD:299845
I-set 1171..1258 CDD:254352
Ig 1188..1255 CDD:143165
Ig 1261..1357 CDD:299845
I-set 1267..1355 CDD:254352
I-set 1368..1448 CDD:254352
Ig 1380..1448 CDD:299845
IG 1460..1541 CDD:214652
IGc2 1470..1532 CDD:197706
IG_like 1557..1633 CDD:214653
Ig 1565..1632 CDD:143165
I-set 1645..1729 CDD:254352
Ig 1648..1725 CDD:299845
I-set 1752..1822 CDD:254352
Ig 1754..1815 CDD:299845
IG 1834..1915 CDD:214652
IGc2 1843..1905 CDD:197706
IG_like 1929..2008 CDD:214653
IGc2 1935..1998 CDD:197706
I-set 2012..2100 CDD:254352
Ig 2021..2092 CDD:299845
I-set 2111..2191 CDD:254352
IGc2 2119..2181 CDD:197706
I-set 2203..2286 CDD:254352
IGc2 2210..2276 CDD:197706
Ig 2299..2380 CDD:299845
IG_like 2300..2380 CDD:214653
I-set 2392..2474 CDD:254352
IGc2 2400..2464 CDD:197706
I-set 2478..2567 CDD:254352
IGc2 2493..2557 CDD:197706
I-set 2582..2663 CDD:254352
IGc2 2594..2653 CDD:197706
I-set 2681..2762 CDD:254352
Ig 2688..2762 CDD:299845
IG_like 2789..2865 CDD:214653
IGc2 2791..2855 CDD:197706
I-set 2879..2960 CDD:254352
Ig 2879..2950 CDD:299845
IG 2972..3052 CDD:214652
IGc2 2982..3042 CDD:197706
IG 3069..3147 CDD:214652
IGc2 3073..3137 CDD:197706
IG 3150..3241 CDD:214652
Ig 3150..3241 CDD:299845
Ig 3244..3338 CDD:299845
I-set 3252..3336 CDD:254352
I-set 3354..3430 CDD:254352
IGc2 3357..3420 CDD:197706
Ig 3433..3523 CDD:299845
IG_like 3443..3523 CDD:214653
IG_like 3535..3616 CDD:214653
IGc2 3543..3606 CDD:197706
I-set 3629..3709 CDD:254352
IGc2 3636..3699 CDD:197706
I-set 3713..3800 CDD:254352
Ig 3719..3795 CDD:299845
Ig 3823..3889 CDD:143165
I-set 3897..3984 CDD:254352
IGc2 3913..3974 CDD:197706
Ig 3993..4066 CDD:299845 2/2 (100%)
IG_like 3994..4075 CDD:214653 4/16 (25%)
IG_like 4085..4165 CDD:214653 18/102 (18%)
IGc2 4092..4155 CDD:197706 13/65 (20%)
Ig 4168..4258 CDD:299845 32/149 (21%)
IG 4177..4256 CDD:214652 28/130 (22%)
I-set 4260..4345 CDD:254352 24/98 (24%)
IGc2 4274..4335 CDD:197706 21/72 (29%)
IG_like 4356..4435 CDD:214653 1/2 (50%)
IGc2 4364..4426 CDD:197706
I-set 4440..4526 CDD:254352
Ig 4440..4521 CDD:299845
TSP1 4533..4584 CDD:214559
TSP1 4589..4641 CDD:214559
TSP1 4646..4698 CDD:214559
TSP1 4703..4755 CDD:214559
TSP1 4760..4812 CDD:214559
TSP1 4817..4869 CDD:214559
G2F 4868..5092 CDD:214774
EGF_CA 5107..5146 CDD:214542
EGF_CA 5147..5190 CDD:284955
EGF_CA 5192..5229 CDD:214542
EGF_CA 5230..5263 CDD:238011
EGF_CA 5272..5313 CDD:284955
EGF_CA 5315..5354 CDD:214542
EGF_CA 5432..5471 CDD:214542
EGF_CA 5472..5508 CDD:214542
dpr13NP_001033956.2 V-set 180..276 CDD:284989 26/101 (26%)
IG_like 182..262 CDD:214653 21/79 (27%)
IG_like 285..362 CDD:214653 21/78 (27%)
IGc2 292..361 CDD:197706 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23279
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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