DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRIA1 and Ir75d

DIOPT Version :10

Sequence 1:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:415 Identity:96/415 - (23%)
Similarity:178/415 - (42%) Gaps:54/415 - (13%)


- Green bases have known domain annotations that are detailed below.


Human   452 LAAEIAKHVGYSYR-LEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDF 515
            |..|:|..:..||. .:.|:   ||.|.|: .:::|::|.......|:|...:.:.|.|..::||
  Fly   296 LMLELANRLNMSYNTYQTVN---YGWRQPN-GSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDF 356

Human   516 SKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEE 579
            ......:...||.::|..|. ..:|:.  |...::|:.|:...|..:|||.|...|||:      
  Fly   357 VAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELFFSPH------ 413

Human   580 FEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 644
                        :::....::|.|..||..|||..:..|:.|.||:....:...|.:.:|::||:
  Fly   414 ------------NHDMSYMDTLNFVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANI 466

Human   645 AAFLTVERMVSP---IESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMW-TYMKSAEPSV 705
            .|.|.     ||   |:|..||. |:.:..|..:....|.:|..|...|.:.:: ..:.|...::
  Fly   467 VALLQ-----SPSDAIQSLSDLG-QSPLEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGENI 525

Human   706 FVRTTEEGMIRVRKSKGKYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSA 765
            ::|.. .||.::|  .|.:||.:|     ..:::...:.:.|..|:: .........|.|.|...
  Fly   526 YMRPL-LGMEKMR--TGLFAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586

Human   766 LRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSKDKTSALSLSNVAGVFYILIGGLG 828
            .:..:...:....|..|:::.:.||...|.:|  |.||..|...|.......:.|.      |..
  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGC------GAA 645

Human   829 LAMLVALIEFCYKSRSESKR-MKGF 852
            ::.::.|.||.::...:..| :||:
  Fly   646 VSFVLFLFEFIFRHFKQVYRIIKGY 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..402 CDD:380613
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 82/355 (23%)
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>372 CDD:473866 19/76 (25%)
Lig_chan 386..643 CDD:459656 65/290 (22%)
Blue background indicates that the domain is not in the aligned region.

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