DRSC/TRiP Functional Genomics Resources

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Protein Alignment GRIA1 and Ir7b

DIOPT Version :10

Sequence 1:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens
Sequence 2:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster


Alignment Length:482 Identity:85/482 - (17%)
Similarity:170/482 - (35%) Gaps:114/482 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   426 ED-PYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAW---NG 486
            || ||::.:.     :|:..:.|....|...:|:::.::.       |.|.....:..|.   :|
  Fly   218 EDMPYLVWRP-----DGSGSFVGIEGALLQFMAENLNFTV-------GLYWMNKEEVLATFDESG 270

Human   487 MVGELVYG-RADVAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSFLD-PLA 546
            .:.:.::| .||.::............|.:|:.   |||   .||:....:|....:..|. |..
  Fly   271 RIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEKLSFPFT 332

Human   547 YEIWMCIVFAYIGVSVVLFLVSRFSPYEW-HSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQ 610
            ..:|..|....|...::|.|:.|     | |..|...          |.:  :..|..::|..::
  Fly   333 PLLWRAIGLVLILACLLLMLLVR-----WRHHHELPR----------NPY--YELLVLTMGGNLE 380

Human   611 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLE 675
            ...  .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.::..::..|    :.|::
  Fly   381 DRW--VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ----HFTIQ 439

Human   676 AGSTKEFFRRSKIAVFE---KMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIE 737
            .....|  .|...::.|   :...|::.:|...|....::        .|..|.:...|..||..
  Fly   440 LAEVNE--ARILASLPELRPEQLVYLEGSELQSFPALAQQ--------SGSSARVAILTPYEYFG 494

Human   738 QRKPCDTMK-----VGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKGEC 797
            ..:....|.     |...:.::.......:.|.|...:|..:...:..|.|:....::       
  Fly   495 YFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQY------- 552

Human   798 GSGGGDSKDKTSA-----------------------------------LSLSNVAGVFYILI-GG 826
             ....|.||::.|                                   ||:..:|.:|:::: ..
  Fly   553 -VSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLILWAN 616

Human   827 LGLAMLVALIEFC---YKSRSESKRMK 850
            || |::|.::|..   .|.|...::||
  Fly   617 LG-AVVVFVLELLLPRIKLRKILRKMK 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..402 CDD:380613
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 68/388 (18%)
Ir7bNP_572410.2 None
Blue background indicates that the domain is not in the aligned region.

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