DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GRB10 and pico

DIOPT Version :9

Sequence 1:XP_016867518.1 Gene:GRB10 / 2887 HGNCID:4564 Length:710 Species:Homo sapiens
Sequence 2:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster


Alignment Length:622 Identity:152/622 - (24%)
Similarity:236/622 - (37%) Gaps:137/622 - (22%)


- Green bases have known domain annotations that are detailed below.


Human    21 AGGAHAATPCGQCCRPLS---------RLDRKHGSIYSASEASSGNLQSSFGADHNAEQEAAAAG 76
            :.||..|.|.|....|.|         ...|.|....|...|...:..||..:::.........|
  Fly   169 SAGAQIAPPPGVTQLPGSAPTMVSMSASSSRSHSRTNSTISADVSSCSSSGISENGHGLGLVLGG 233

Human    77 PVTGSSVTSSPVTGSQVLTWVLSVKPGWPPQQTVLQSQLLTEDDVDLEALVNDMNASLESLYSAC 141
            |.:...:...|..|...:...|.|               :|..:...|:..||            
  Fly   234 PGSAGMMVQPPPPGGMTMGITLGV---------------VTPREPRTESPDND------------ 271

Human   142 SMQSDTVPLLQNGQHARSQPRASGPPRSIQPQVSPRQRVQRSQPVHILAVRRLQEEDQQFRTSSL 206
            |..||||.||.:...|.|             ..|.:|:.|:.|..|....:..|.:.||.:    
  Fly   272 SAFSDTVSLLSSESSASS-------------NTSLQQQQQQQQQQHHQHQQHHQHQQQQQK---- 319

Human   207 PAIPNPFPELCGPGSPPVLTPGSLPPSQAAAKQNRKSRAGDSSHHSLVLCHG---TCPLSTTAAG 268
                   |:|.|                          |....||.:...||   :...|.|.|.
  Fly   320 -------PQLAG--------------------------AEKLHHHGVHGQHGGQQSGANSITKAD 351

Human   269 ETRVGL-----VTQKQLFHIRDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHCVDDNSWTLV 328
            :.::.|     ...::||    ||.|:.||.||.:.:...|....:.:||..|:|....::|.||
  Fly   352 KIQLALHKLESAPIRRLF----VKAFTSDGASKSLLVDERMGCGHVTRLLADKNHVQMQSNWALV 412

Human   329 EHHPHLGLERCLEDHELVVQVESTMASE--SKFLFRKNYAKYEFFKNPMNFFP-EQMVTWCQQSN 390
            ||...|.:||..|||||:|....|..|:  ::.||::...|...|..|..:.| .||...||...
  Fly   413 EHLGDLQMERLFEDHELLVDNLMTWHSDAGNRVLFQQRPDKVTLFLRPELYLPGPQMAPGCQHDE 477

Human   391 GSQTQLLQNFLNSSSCPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSKEPRHLQLLADL 455
            .::..||..|.:|.:..::.|.|::|...||.||:.:..||.||||...|..:|..|.|..|...
  Fly   478 QTRQMLLDEFFDSHNQLQMDGPLYMKADPKKGWKRYHFVLRSSGLYYFPKEKTKNTRDLACLNLF 542

Human   456 EDSNIFSLIAGRKQYNAPTDHGLCIK---PNKVRNETKELRLLCAEDEQTRTCWMTAFRLLKYGM 517
            ...|:::.:..||::.:|||:....|   .:.:....:.|::|||||..|...|:||.|:.|||.
  Fly   543 HGHNVYTGLGWRKKWKSPTDYTFGFKAVGDSSLGKSCRSLKMLCAEDLPTLDRWLTAIRVCKYGK 607

Human   518 LLYQNYRIPQQRKALLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRS 582
            .|:.::                 :|:.|:..::.|                .|..:...|...||
  Fly   608 QLWDSH-----------------KSLLEDLCLSRD----------------DAVSQSSFAASMRS 639

Human   583 TRMNILGSQSPLHPSTLSTVIHRTQHWFHGRISREES 619
            ..::.:.|..|....::|:.|....:...||.||..|
  Fly   640 ESISSISSAVPSQCGSVSSAISSMSNSTSGRTSRASS 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GRB10XP_016867518.1 None
picoNP_608363.1 GRB7_RA 364..451 CDD:176382 32/90 (36%)
PH_APBB1IP 489..614 CDD:269961 41/141 (29%)
PH 494..605 CDD:278594 36/110 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157315
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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