DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spop and rdx

DIOPT Version :9

Sequence 1:NP_001093966.1 Gene:Spop / 287643 RGDID:1311613 Length:374 Species:Rattus norvegicus
Sequence 2:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster


Alignment Length:374 Identity:298/374 - (79%)
Similarity:338/374 - (90%) Gaps:2/374 - (0%)


- Green bases have known domain annotations that are detailed below.


  Rat     1 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKL 65
            :|||||||.| |::: ||||:|||||:||||||||||||||||||||||||:||||||:||||||
  Fly   458 VSRVPSPPLP-EVNT-PVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKL 520

  Rat    66 KWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD 130
            ||||||||||||||||||||||||||||.||||||||||||||||.|||||||||||||||||||
  Fly   521 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKD 585

  Rat   131 WGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWE 195
            |||||||||||||||||||||:||||:|||||||.||||||||:.:...|||||:|:::||.|::
  Fly   586 WGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD 650

  Rat   196 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 260
            |.:|:|..|.|.|:|||||||||||||.||:|||||||||.|.|||.|.||:.||.|||:.||||
  Fly   651 NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYT 715

  Rat   261 GKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325
            ||||||:||||||||||||||||:||||||:|||.|||||.|||.|||||||||||||.|.:|||
  Fly   716 GKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780

  Rat   326 NYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS 374
            |.||:||:|||||::|:.:|.||:|||:|:||:.|.|.:||||||:|.|
  Fly   781 NTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpopNP_001093966.1 MATH_SPOP 28..166 CDD:239743 131/137 (96%)
BTB_POZ_SPOP-like 182..301 CDD:349588 88/118 (75%)
BACK_SPOP 297..367 CDD:350593 47/69 (68%)
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 131/137 (96%)
BTB 645..749 CDD:279045 78/103 (76%)
BTB 656..752 CDD:197585 75/95 (79%)
SPOP_C 752..814 CDD:269807 44/61 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 192 1.000 Domainoid score I3130
eggNOG 1 0.900 - - E1_KOG1987
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68354
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D864323at2759
OrthoFinder 1 1.000 - - FOG0000398
OrthoInspector 1 1.000 - - otm46185
orthoMCL 1 0.900 - - OOG6_101509
Panther 1 1.100 - - O PTHR24413
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X131
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.820

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