DRSC/TRiP Functional Genomics Resources

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Protein Alignment GPER1 and frpr-11

DIOPT Version :9

Sequence 1:NP_001035055.1 Gene:GPER1 / 2852 HGNCID:4485 Length:375 Species:Homo sapiens
Sequence 2:NP_001343679.1 Gene:frpr-11 / 187065 WormBaseID:WBGene00019444 Length:370 Species:Caenorhabditis elegans


Alignment Length:344 Identity:67/344 - (19%)
Similarity:140/344 - (40%) Gaps:68/344 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    33 LSHPLLGTALANGTGELSEHQQYVIGLFLSCLYTIFLFPIGFVGNIL-ILVVNISFREKMTIPDL 96
            |.|..|.|   ..:..|:.|...::.:|...:..:.|  ||..|||: |.|.:.....|.||..|
 Worm    13 LEHMSLNT---TASSSLNSHSYDMVEVFAMIMLPLIL--IGIFGNIISIYVYSRHHMNKNTIGFL 72

Human    97 YFINLAVADLILVADSLIEV----FNLHERYYDIAVLCTFMSLFLQVNMYSSV--------FFLT 149
             .::|:..|||::..::...    |.....|::|..:.|..|.|..:..|..:        :.:.
 Worm    73 -LLSLSTIDLIVLITAMPSFGTYKFPFFPGYHEIGSVHTIFSAFCLIYFYPLMCMGKMMGQYIIV 136

Human   150 WMSFDRYIALARAMRCSLFRTKHHA--RLSCGLI------------WMASVSATLVPFTAVHLQH 200
            .:|.:|:.|:.|.::..::.|:.:.  .::|.:.            :.|::...::.|...|:..
 Worm   137 LISVERWFAVCRPLQVQIWCTQKNTIRAMTCIIAISILFNAPRFFEFKANLITGVIGFGLAHISK 201

Human   201 TDEACFCFADVREVQWLEVTLGFIVPFAIIGLCYSLIVRVLVRAHRHRGLRPRRQ----KALRMI 261
            .:...:.:..:|     .:....::||:||.:....:::.|.:::..|.|...:|    |...|:
 Worm   202 NEWYFYLYYGIR-----AIIFDALIPFSIIAVTNIQVIQQLRKSNEERKLMTTQQQKDNKTTTML 261

Human   262 LAVVLVFFVC-WLPENV-FISVHLLQRTQPGAAPCKQSFRHAH--------PLTGHIVNLAAFSN 316
            |.::.::.:| :|..:| ||::                |.|.:        .:..||.|:.....
 Worm   262 LVMIFMYAICHFLCTSVKFINL----------------FSHNYVQFQFVIFKIIHHISNVLLVFY 310

Human   317 SCLNPLIYSFLGETFRDKL 335
            |.....||....|.:|:.|
 Worm   311 SASTFFIYLIFSEKYRNVL 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GPER1NP_001035055.1 7tmA_GPER1 60..335 CDD:320120 60/315 (19%)
TM helix 1 62..86 CDD:320120 8/24 (33%)
TM helix 2 95..116 CDD:320120 5/20 (25%)
TM helix 3 131..153 CDD:320120 4/29 (14%)
TM helix 4 176..192 CDD:320120 2/27 (7%)
TM helix 5 212..235 CDD:320120 5/22 (23%)
TM helix 6 258..280 CDD:320120 6/23 (26%)
TM helix 7 303..328 CDD:320120 6/24 (25%)
frpr-11NP_001343679.1 7tmA_FMRFamide_R-like 36..329 CDD:320109 60/316 (19%)
TM helix 1 37..61 CDD:320109 9/25 (36%)
TM helix 2 70..92 CDD:320109 5/22 (23%)
TM helix 3 118..140 CDD:320109 1/21 (5%)
TM helix 4 163..179 CDD:320109 1/15 (7%)
TM helix 5 208..231 CDD:320109 5/27 (19%)
TM helix 6 255..280 CDD:320109 6/24 (25%)
TM helix 7 297..322 CDD:320109 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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