DRSC/TRiP Functional Genomics Resources

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Protein Alignment GPER1 and H09F14.1

DIOPT Version :9

Sequence 1:NP_001035055.1 Gene:GPER1 / 2852 HGNCID:4485 Length:375 Species:Homo sapiens
Sequence 2:NP_001256232.1 Gene:H09F14.1 / 186709 WormBaseID:WBGene00010375 Length:401 Species:Caenorhabditis elegans


Alignment Length:380 Identity:74/380 - (19%)
Similarity:140/380 - (36%) Gaps:84/380 - (22%)


- Green bases have known domain annotations that are detailed below.


Human    54 QYVIGLFLSCLYTIFLFPIGFVGNILILVVNISFREKMTIPDLYFINLAVADLILVADSLIEVFN 118
            |:.:.::|..|..||    |..||::.||.....|.:....::|.|.|.:||.|.:...|:..|.
 Worm     7 QFDVYMYLLPLIVIF----GLSGNVISLVTIFHSRLRRVNANIYLIVLTLADSIFLTGILLICFK 67

Human   119 LHERYYDIAVLCTFMSLFLQVNMYSSVFFLTWMSFDRYIALARAMRCSLFRTKHHARLSCGLIWM 183
            :....|:   .|..:...|....|.|.:....::.:||:|:|..:  |..:..|..|....|.|:
 Worm    68 VDWIAYE---YCVGLEYVLMTASYISSWSTAALTIERYLAIAHPL--SHMKYGHVDRAKVMLYWV 127

Human   184 ASVSATLVPFTAVHLQH------TDEACFCFADVRE---VQWLEVTLGFIVPFAIIGLCYSLIVR 239
            .      :||.....|.      |:|......:...   .|.::..|.::||..||.:...|:..
 Worm   128 P------IPFVLQLFQFFSLEPATEERKCALKEANYQIIAQAVDTVLCYVVPCGIIVVLNILVAL 186

Human   240 VLVRAHRHRGLRPRRQKALR---------------MILAVVLV-----FFVCWLPENVFISVHLL 284
            .:.::..|.....::..:.|               .::.:|.|     |:|..:.|.||   .::
 Worm   187 QVQKSQEHFMAETKKSNSRRTGGSSSSSGTWTRILWVMPLVFVVLNTPFYVIMMIEIVF---QII 248

Human   285 QRTQPGAAPCKQSFRHAHPLTGHIVNLAAFSNSCLNPLIYSFLGETFRDKLRL---------YIE 340
            .::.|......:.|...:. |.|.:   .:.|:.::.|:|:|....||....:         |.|
 Worm   249 YQSPPSGDTRSELFVTVYN-TAHYM---YYMNTAIDVLVYAFSSANFRKTAVIAWKRILCPGYAE 309

Human   341 QKTNLPALNRFCHAALKAV---------------IPDST---------EQSDVRF 371
            ::.....|....|:...::               :.|.|         |:|.:||
 Worm   310 RQKGKRFLLSMVHSVSDSIRKRIPIAQPAPHTVLVTDQTSRISYRMTSERSTIRF 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GPER1NP_001035055.1 7tmA_GPER1 60..335 CDD:320120 63/303 (21%)
TM helix 1 62..86 CDD:320120 8/23 (35%)
TM helix 2 95..116 CDD:320120 7/20 (35%)
TM helix 3 131..153 CDD:320120 3/21 (14%)
TM helix 4 176..192 CDD:320120 2/15 (13%)
TM helix 5 212..235 CDD:320120 6/25 (24%)
TM helix 6 258..280 CDD:320120 8/41 (20%)
TM helix 7 303..328 CDD:320120 6/24 (25%)
H09F14.1NP_001256232.1 7tm_GPCRs 10..295 CDD:391938 63/306 (21%)
TM helix 1 10..36 CDD:341315 9/29 (31%)
TM helix 2 43..67 CDD:341315 7/23 (30%)
TM helix 3 77..106 CDD:341315 6/28 (21%)
TM helix 5 158..183 CDD:341315 6/24 (25%)
TM helix 6 212..242 CDD:341315 4/29 (14%)
TM helix 7 263..288 CDD:341315 6/28 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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