Sequence 1: | NP_005550.2 | Gene: | LAMA1 / 284217 | HGNCID: | 6481 | Length: | 3075 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101707.2 | Gene: | Lama1 / 316758 | RGDID: | 1307207 | Length: | 3083 | Species: | Rattus norvegicus |
Alignment Length: | 3084 | Identity: | 2365/3084 - (76%) |
---|---|---|---|
Similarity: | 2663/3084 - (86%) | Gaps: | 12/3084 - (0%) |
- Green bases have known domain annotations that are detailed below.
Human 1 MRG---GVLLVLLLC----VAAQCRQRGLFPAILNLASNAHISTNATCGEKGPEMFCKLVEHVPG 58
Human 59 RPVRNPQCRICDGNSANPRERHPISHAIDGTNNWWQSPSIQNGREYHWVTITLDLRQVFQVAYVI 123
Human 124 IKAANAPRPGNWILERSLDGTTFSPWQYYAVSDSECLSRYNITPRRGPPTYRADDEVICTSYYSR 188
Human 189 LVPLEHGEIHTSLINGRPSADDLSPKLLEFTSARYIRLRLQRIRTLNADLMTLSHREPKELDPIV 253
Human 254 TRRYYYSIKDISVGGMCICYGHASSCPWDETTKKLQCQCEHNTCGESCNRCCPGYHQQPWRPGTV 318
Human 319 SSGNTCEACNCHNKAKDCYYDESVAKQKKSLNTAGQFRGGGVCINCLQNTMGINCETCIDGYYRP 383
Human 384 HKVSPYEDEPCRPCNCDPVGSLSSVCIKDDLHSDLHNGKQPGQCPCKEGYTGEKCDRCQLGYKDY 448
Human 449 PTCVSCGCNPVGSASDEPCTGPCVCKENVEGKACDRCKPGFYNLKEKNPRGCSECFCFGVSDVCS 513
Human 514 SLSWPVGQVNSMSGWLVTDLISPRKIPSQQDALGGRHQVSINNTAVMQRLAPKYYWAAPEAYLGN 578
Human 579 KLTAFGGFLKYTVSYDIPVETVDSNLMSHADVIIKGNGLTLSTQAEGLSLQPYEEYLNVVRLVPE 643
Human 644 NFQDFHSKRQIDRDQLMTVLANVTHLLIRANYNSAKMALYRLESVSLDIASSNAIDLVVAADVEH 708
Human 709 CECPQGYTGTSCESCLSGYYRVDGILFGGICQPCECHGHAAECNVHGVCIACAHNTTGVHCEQCL 773
Human 774 PGFYGEPSRGTPGDCQPCACPLTIASNNFSPTCHLNDGDEVVCDWCAPGYSGAWCERCADGYYGN 838
Human 839 PTVPGESCVPCDCSGNVDPSEAGHCDSVTGECLKCLGNTDGAHCERCADGFYGDAVTAKNCRACE 903
Human 904 CHVKGSHSAVCHLETGLCDCKPNVTGQQCDQCLHGYYGLDSGHGCRPCNCSVAGSVSDGCTDEGQ 968
Human 969 CHCVPGVAGKRCDRCAHGFYAYQDGSCTPCDCPHTQNTCDPETGECVCPPHTQGVKCEECEDGHW 1033
Human 1034 GYDAEVGCQACNCSLVGSTHHRCDVVTGHCQCKSKFGGRACDQCSLGYRDFPDCVPCDCDLRGTS 1098
Human 1099 GDACNLEQGLCGCVEETGACPCKENVFGPQCNECREGTFALRADNPLGCSPCFCSGLSHLCSELE 1163
Human 1164 DYVRTPVTLGSDQPLLRVVSQSNLRGTTEGVYYQAPDFLLDAATVRQHIRAEPFYWRLPQQFQGD 1228
Human 1229 QLMAYGGKLKYSVAFYSLDGVGTSNFEPQVLIKGGRIRKQVIYMDAPAPENGVRQEQEVAMRENF 1293
Human 1294 WKYFNSVSEKPVTREDFMSVLSDIEYILIKASYGQGLQQSRISDISMEVGRKAEKLHPEEEVASL 1358
Human 1359 LENCVCPPGTVGFSCQDCAPGYHRGKLPAGSDRGPRPLVAPCVPCSCNNHSDTCDPNTGKCLNCG 1423
Human 1424 DNTAGDHCDVCTSGYYGKVTGSASDCALCACPHSPPASFSPTCVLEGDHDFRCDACLLGYEGKHC 1488
Human 1489 ERCSSSYYGNPQTPGGSCQKCDCNPHGSVHGDCDRTSGQCVCRLGASGLRCDECEPRHILMETDC 1553
Human 1554 VSCDDECVGVLLNDLDEIGDAVLSLNLTGIIPVPYGILSNLENTTKYLQESLLKENMQKDLGKIK 1618
Human 1619 LEGVAEETDNLQKKLTRMLASTQKVNRATERIFKESQDLAIAIERLQMSITEIMEK-TTLNQTLD 1682
Human 1683 EDFLLPNSTLQNMQQNGTSLLEIMQIRDFTQLHQNATLELKAAEDLLSQIQENYQKPLEELEVLK 1747
Human 1748 EAASHVLSKHNNELKAAEALVREAEAKMQESNHLLLMVNANLREFSDKKLHVQEEQNLTSELIVQ 1812
Human 1813 GRGLIDAAAAQTDAVQDALEHLEDHQDKLLLWSAKIRHHIDDLVMHMSQRNAVDLVYRAEDHAAE 1877
Human 1878 FQRLADVLYSGLENIRNVSLNATSAAYVHYNIQSLIEESEELARDAHRTVTETSLLSESLVSNGK 1942
Human 1943 AAVQRSSRFLKEGNNLSRKLPGIALELSELRNKTNRFQENAVEITRQTNESLLILRAIPKGIRDK 2007
Human 2008 GAKTKELATSASQSAVSTLRDVAGLSQELLNTSASLSRVNTTLRETHQLLQDSTMATLLAGRKVK 2072
Human 2073 DVEIQANLLFDRLKPLKMLEENLSRNLSEIKLLISQARKQAASIKVAVSADRDCIRAYQPQISST 2137
Human 2138 NYNTLTLNVKTQEPDNLLFYLGSSTASDFLAVEMRRGRVAFLWDLGSGSTRLEFPDFPIDDNRWH 2202
Human 2203 SIHVARFGNIGSLSVKEMSSNQKSPTKTSKSPGTANVLDVNNSTLMFVGGLGGQIKKSPAVKVTH 2267
Human 2268 FKGCLGEAFLNGKSIGLWNYIEREGKCRGCFGSSQNEDPSFHFDGSGYSVVEKSLPATVTQIIML 2332
Human 2333 FNTFSPNGLLLYLGSYGTKDFLSIELFRGRVKVMTDLGSGPITLLTDRRYNNGTWYKIAFQRNRK 2397
Human 2398 QGVLAVIDAYNTSNKETKQGETPGASSDLNRLDKDPIYVGGLPRSRVVRRGVTTKSFVGCIKNLE 2462
Human 2463 ISRSTFDLLRNSYGVRKGCLLEPIRSVSFLKGGYIELPPKSLSPESEWLVTFATTNSSGIILAAL 2527
Human 2528 GGDVEKRGDREEAHVPFFSVMLIGGNIEVHVNPGDGTGLRKALLHAPTGTCSDGQAHSISLVRNR 2592
Human 2593 RIITVQLDENNPVEMKLGTLVESRTINVSNLYVGGIPEGEGTSLLTMRRSFHGCIKNLIFNLELL 2657
Human 2658 DFNSAVGHEQVDLDTCWLSERPKLAPDAEDSKLLPEPRAFPEQ--CVVDAALEYVPGAHQFGLTQ 2720
Human 2721 NSHFILPFNQSAVRKKLSVELSIRTFASSGLIYYMAHQNQADYAVLQLHGGRLHFMFDLGKGRTK 2785
Human 2786 VSHPALLSDGKWHTVKTDYVKRKGFITVDGRESPMVTVVGDGTMLDVEGLFYLGGLPSQYQARKI 2850
Human 2851 GNITHSIPACIGDVTVNSKQLDKDSPVSAFTVNRCYAVAQEGTYFDGSGYAALVKEGYKVQSDVN 2915
Human 2916 ITLEFRTSSQNGVLLGISTAKVDAIGLELVDGKVLFHVNNGAGRITAAYEPKTATVLCDGKWHTL 2980
Human 2981 QANKSKHRITLIVDGNAVGAESPHTQSTSVDTNNPIYVGGYPAGVKQKCLRSQTSFRGCLRKLAL 3045
Human 3046 IKSPQVQSFDFSRAFELHGVFLHSCPGTE 3074 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMA1 | NP_005550.2 | LamNT | 16..268 | CDD:214532 | 225/251 (90%) |
EGF_Lam | 270..317 | CDD:238012 | 40/46 (87%) | ||
Laminin_EGF | 397..456 | CDD:278482 | 44/58 (76%) | ||
Laminin_EGF | 454..500 | CDD:278482 | 31/45 (69%) | ||
Laminin_B | 568..696 | CDD:278481 | 118/127 (93%) | ||
EGF_Lam | 741..789 | CDD:238012 | 37/47 (79%) | ||
Laminin_EGF | 791..846 | CDD:278482 | 47/54 (87%) | ||
EGF_Lam | 848..900 | CDD:238012 | 48/51 (94%) | ||
Laminin_EGF | 902..948 | CDD:278482 | 35/45 (78%) | ||
Laminin_EGF | 951..998 | CDD:278482 | 34/46 (74%) | ||
Laminin_EGF | 998..1041 | CDD:278482 | 28/42 (67%) | ||
Laminin_EGF | 1044..1092 | CDD:278482 | 33/47 (70%) | ||
Laminin_EGF | 1090..1147 | CDD:278482 | 42/56 (75%) | ||
LamB | 1213..1344 | CDD:214597 | 107/130 (82%) | ||
Laminin_EGF | 1403..1449 | CDD:278482 | 33/45 (73%) | ||
Laminin_EGF | 1452..1506 | CDD:278482 | 38/53 (72%) | ||
Laminin_EGF | 1509..1556 | CDD:278482 | 35/46 (76%) | ||
Laminin_I | 1567..1830 | CDD:283627 | 154/263 (59%) | ||
BAR | 1609..1841 | CDD:299863 | 130/232 (56%) | ||
Laminin_II | 2011..2145 | CDD:283628 | 101/133 (76%) | ||
LamG | 2141..2280 | CDD:214598 | 112/138 (81%) | ||
LamG | 2307..2463 | CDD:238058 | 127/155 (82%) | ||
Laminin_G_1 | 2514..2658 | CDD:278483 | 103/143 (72%) | ||
Laminin_G_1 | 2743..2872 | CDD:278483 | 106/128 (83%) | ||
LamG | 2892..3043 | CDD:238058 | 118/150 (79%) | ||
Lama1 | NP_001101707.2 | LamNT | 25..275 | CDD:214532 | 225/249 (90%) |
EGF_Lam | 277..324 | CDD:238012 | 40/46 (87%) | ||
Laminin_EGF | 404..463 | CDD:278482 | 44/58 (76%) | ||
Laminin_EGF | 461..507 | CDD:278482 | 31/45 (69%) | ||
Laminin_B | 575..703 | CDD:278481 | 118/127 (93%) | ||
EGF_Lam | <715..739 | CDD:214543 | 21/23 (91%) | ||
EGF_Lam | 748..796 | CDD:238012 | 37/47 (79%) | ||
Laminin_EGF | 798..853 | CDD:278482 | 47/54 (87%) | ||
EGF_Lam | 855..907 | CDD:238012 | 48/51 (94%) | ||
Laminin_EGF | 909..955 | CDD:278482 | 35/45 (78%) | ||
Laminin_EGF | 958..1005 | CDD:278482 | 34/46 (74%) | ||
EGF_Lam | 1004..1049 | CDD:238012 | 30/44 (68%) | ||
Laminin_EGF | 1051..1099 | CDD:278482 | 33/47 (70%) | ||
Laminin_EGF | 1097..1154 | CDD:278482 | 42/56 (75%) | ||
Laminin_B | 1225..1351 | CDD:278481 | 103/125 (82%) | ||
Laminin_EGF | 1410..1456 | CDD:278482 | 33/45 (73%) | ||
Laminin_EGF | 1459..1513 | CDD:278482 | 38/53 (72%) | ||
Laminin_EGF | 1516..>1553 | CDD:278482 | 27/36 (75%) | ||
Laminin_I | 1574..1825 | CDD:283627 | 149/251 (59%) | ||
SPEC | 1613..1861 | CDD:295325 | 140/248 (56%) | ||
Laminin_I | 1838..2092 | CDD:283627 | 149/253 (59%) | ||
Laminin_II | 2018..2152 | CDD:283628 | 101/133 (76%) | ||
LamG | 2136..2285 | CDD:238058 | 122/148 (82%) | ||
LamG | 2314..2470 | CDD:238058 | 127/155 (82%) | ||
LamG | 2495..2659 | CDD:238058 | 123/164 (75%) | ||
Laminin_G_1 | 2751..2880 | CDD:278483 | 106/128 (83%) | ||
LamG | 2900..3053 | CDD:238058 | 119/152 (78%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C83695232 | |
Domainoid | 1 | 1.000 | 478 | 1.000 | Domainoid score | I7985 |
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
HGNC | 1 | 1.500 | - | - | ||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H21146 | |
Inparanoid | 1 | 1.050 | 4939 | 1.000 | Inparanoid score | I119 |
NCBI | 1 | 1.000 | - | - | ||
OMA | 1 | 1.010 | - | - | QHG43214 | |
OrthoDB | 1 | 1.010 | - | - | D128982at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004257 | |
OrthoInspector | 1 | 1.000 | - | - | oto130874 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100395 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR10574 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X2997 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
17 | 17.270 |