DRSC/TRiP Functional Genomics Resources

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Protein Alignment GPR12 and npr-42

DIOPT Version :10

Sequence 1:NP_005279.1 Gene:GPR12 / 2835 HGNCID:4466 Length:334 Species:Homo sapiens
Sequence 2:NP_494751.1 Gene:npr-42 / 182068 WormBaseID:WBGene00015299 Length:333 Species:Caenorhabditis elegans


Alignment Length:319 Identity:74/319 - (23%)
Similarity:129/319 - (40%) Gaps:48/319 - (15%)


- Green bases have known domain annotations that are detailed below.


Human    46 PWDIVLCTSGTLISCENAIVVLIIFHNPSLRAPMFLLIGSLALAD----LLAGIGLITNFV---- 102
            |..|:||.....:   |.:||:...: ..:|:....|..||||:|    ::.|..|..|..    
 Worm    15 PSIIILCCVAAFL---NFMVVISRLY-CKMRSASLELTYSLALSDTWTSIVIGFSLFWNSYKPVV 75

Human   103 -------FAYLLQSEATKLVTIGLIVASFSASVCSLLAITVDRYLSLYYALTYHSERTVTFTYVM 160
                   :.:.|..||.:  |.||:...|     .|:|:....|:::.....:|....:...|:|
 Worm    76 LNIPHSSYCFPLTLEAFR--TGGLLTGIF-----HLVALAFTHYMTIKRPFDHHKVLPIRTIYIM 133

Human   161 LVMLWGTSICLGLLPVMGWNCLR--DESTCSVVRPLTKN--NAAILSVSFLFMFALMLQLYIQIC 221
            :..:|.|. .:.|:.....|..:  ....|..:: ..:|  ..|::|:..:|:..|....||::.
 Worm   134 IFFMWATP-PMALMIYFASNSGQGYQSEKCMGIK-FYENFYFRALVSLIIVFLIILTTIFYIKML 196

Human   222 KIVMRHAHQIALQHHFLATSHYVTTRKGVSTLAIILGTFAACWMPFTLYSLIADYTYP------- 279
            :.:.....:.|.....|..|  ...|:.|.|..:|.|||...|||.::..::...:.|       
 Worm   197 QKITEVRSKTASNSQTLGAS--ARGRRTVVTAVLIFGTFLIGWMPASILYILTAESMPLYNKHSV 259

Human   280 --SIYTYATLLPATYNSIINPVIYAFRNQEI-----QKALCLICCGCIPSSLAQRARSP 331
              :|.:.|.|:.....::.||:|||.|..||     ||.|..:..|..|:...|....|
 Worm   260 SITIMSIAVLVSIMAKTLCNPIIYATRIPEINQFVFQKLLYRVLPGRNPTIRRQSELEP 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GPR12NP_005279.1 7tmA_GPR12 45..312 CDD:320627 69/298 (23%)
TM helix 1 46..72 CDD:320627 7/25 (28%)
TM helix 2 79..104 CDD:320627 9/39 (23%)
TM helix 3 113..143 CDD:320627 7/29 (24%)
TM helix 4 155..175 CDD:320627 5/19 (26%)
TM helix 5 194..223 CDD:320627 7/30 (23%)
TM helix 6 244..274 CDD:320627 10/29 (34%)
TM helix 7 280..305 CDD:320627 8/24 (33%)
npr-42NP_494751.1 7tm_classA_rhodopsin-like 17..286 CDD:410626 63/283 (22%)
TM helix 1 17..38 CDD:410626 6/24 (25%)
TM helix 2 44..72 CDD:410626 9/27 (33%)
TM helix 3 84..116 CDD:410626 10/38 (26%)
TM helix 4 129..148 CDD:410626 5/19 (26%)
TM helix 5 173..194 CDD:410626 5/20 (25%)
TM helix 6 217..250 CDD:410626 10/32 (31%)
TM helix 7 261..286 CDD:410626 8/24 (33%)

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