DRSC/TRiP Functional Genomics Resources

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Protein Alignment POC1B and wdr-5.3

DIOPT Version :9

Sequence 1:NP_758440.1 Gene:POC1B / 282809 HGNCID:30836 Length:478 Species:Homo sapiens
Sequence 2:NP_001024299.1 Gene:wdr-5.3 / 179489 WormBaseID:WBGene00013862 Length:501 Species:Caenorhabditis elegans


Alignment Length:297 Identity:76/297 - (25%)
Similarity:136/297 - (45%) Gaps:6/297 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    10 LERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNL 74
            |.:...||..:::.:..|..||.|.|.|.|..:.:||............|:..:....:|.:...
 Worm   205 LVKTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQF 269

Human    75 LASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYS 139
            :||||.|.||:::...........:.||..|....|:.....:|:|..|::::||.......:..
 Worm   270 IASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVKC 334

Human   140 LYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDS-VGFANFVDFNPSGTCIAS 203
            :..|:..:....::.||..:.:.|.|..|::||..:..|:....|: .....||.|:|:|..:.|
 Worm   335 IPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSPNGKYLLS 399

Human   204 AGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFH---PSGNYLITASSDGTLKILDLLEGRLIYT 265
            |..|.::|:||.:..|.|::|..|.....|:..:   |.|.::|:.|.||.:.:..:...:::..
 Worm   400 AQLDSSLKLWDPKKAKPLKYYNGHKNKKYCLFANMSVPLGKHIISGSEDGRILVWSIQTKQIVQI 464

Human   266 LQGHTGPVFTVSFSKGGELFASGG--ADTQVLLWRTN 300
            |:|||.||..........:.||||  .|..:.:||.|
 Worm   465 LEGHTTPVLATDSHPTLNIIASGGLEPDNVIRIWRRN 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POC1BNP_758440.1 WD40 10..298 CDD:238121 73/293 (25%)
WD 1 16..55 11/38 (29%)
WD40 repeat 21..58 CDD:293791 9/36 (25%)
WD 2 58..99 9/40 (23%)
WD40 repeat 63..100 CDD:293791 8/36 (22%)
WD 3 101..139 9/37 (24%)
WD40 repeat 106..142 CDD:293791 6/35 (17%)
WD 4 142..181 9/38 (24%)
WD40 repeat 147..182 CDD:293791 8/34 (24%)
WD 5 183..223 14/40 (35%)
WD40 repeat 190..225 CDD:293791 13/34 (38%)
WD 6 226..265 8/41 (20%)
WD40 repeat 231..267 CDD:293791 7/38 (18%)
WD 7 268..307 13/35 (37%)
WD40 repeat 273..299 CDD:293791 7/27 (26%)
wdr-5.3NP_001024299.1 WD40 <200..501 CDD:225201 75/295 (25%)
WD40 205..499 CDD:238121 73/293 (25%)
WD40 repeat 216..253 CDD:293791 9/36 (25%)
WD40 repeat 259..295 CDD:293791 8/35 (23%)
WD40 repeat 300..336 CDD:293791 7/35 (20%)
WD40 repeat 343..378 CDD:293791 8/34 (24%)
WD40 repeat 385..421 CDD:293791 13/35 (37%)
WD40 repeat 429..466 CDD:293791 7/36 (19%)
WD40 repeat 472..498 CDD:293791 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C161450765
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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