DRSC/TRiP Functional Genomics Resources

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Protein Alignment GOLGA3 and eea-1

DIOPT Version :9

Sequence 1:NP_001376612.1 Gene:GOLGA3 / 2802 HGNCID:4426 Length:1498 Species:Homo sapiens
Sequence 2:NP_001024127.1 Gene:eea-1 / 179832 WormBaseID:WBGene00011696 Length:1205 Species:Caenorhabditis elegans


Alignment Length:1378 Identity:264/1378 - (19%)
Similarity:531/1378 - (38%) Gaps:402/1378 - (29%)


- Green bases have known domain annotations that are detailed below.


Human   273 LKQNRSSAASVVSEISLSPDTDDRLENTSLAGDSVSEVDGNDSDSSSYSSASTRGTYGILS---- 333
            ||:..|..|:         |.|.||.|      |...:....|.|.|..|.:.:...|.|.    
 Worm     5 LKEQVSQVAN---------DIDGRLNN------SRPSISSQGSQSQSQKSENDQEIEGFLCPMCM 54

Human   334 --------------------KTVGTQDTPYMVNGQEIPADTLGQFPSIKDVLQAAAAEHQDQGQE 378
                                :|...::.|.....|:.|.....:...|:: |:....|.:...:.
 Worm    55 VELGGPDELTVHFEKEHSDFQTSANRNHPDYTPPQQAPLAFATKDQEIEE-LRIRVNEEKRFAER 118

Human   379 VNGEVRSRRDSICSSVSLESSAAETQ----EEMLQVL--------KEKMRLEGQLEALSLEASQA 431
            :..|:    |:|.|.:::.|...|.:    .:.:|||        ::.:.||.:....|.|..|.
 Worm   119 IKEEL----DNIKSVMAIASEVTEDEIPYMAQQIQVLTADKGMVTRQFLELEKESGQQSRELQQV 179

Human   432 LKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNA 496
            .:|:.:|.|:|..:|..::...:.|.|.:...:.|..|:..:|......|..::.|:.||:.:  
 Worm   180 KQERGDLMAKLKQMSVTMREITDESESGKVEMEDLKRELKVVKSDVVRYEIEVSRLEKMLDQR-- 242

Human   497 SLASSNNDLQVAEEQY---QRLMAKV-----------------------------EDMQRSMLSK 529
               .|.:|:.|...:.   |:||..:                             |::::.:...
 Worm   243 ---PSEDDVNVLRTELVNAQKLMDAISQEKDIEIKEHLNSIRNLSMEREKQHIVNENLEKKIGEG 304

Human   530 DNTVHDLRQQMTALQSQLQQ-----VQLER----------------TTLTSKLKASQAEISSLQS 573
            :.||..|:....|...:|:|     ||||.                ..|..|::.||..:..|.:
 Worm   305 EETVKQLQISYDAQSEELKQRNERVVQLEARIEENVFELSENKQNVKRLEDKVQESQDALQMLSN 369

Human   574 VRQWYQQQLALAQ-----------------EARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLS 621
            :....::|:....                 |.:|.:|||.             |:.|::.|:.|:
 Worm   370 INGSNEEQMISLNSKFERNTAERKRIEAVFEEKVTVQGER-------------LKTLEMANLDLT 421

Human   622 QQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFM-----QIQEAKTMVEEDLQRRLEEFEGER 681
            .:|.     ||              ..:||:|.:.:     :|.|..:.: .||:.:|.|.|.:.
 Worm   422 NELA-----SM--------------GSLLDKERSLLEEKNKEISERDSSI-NDLKEKLAESEKKA 466

Human   682 ERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTL----TQEALQSREQS--- 739
            .:.:......|.|.:     .|||     ||..||:...|||::::.    .:.|::..||.   
 Worm   467 TKYKNELKEHADLVE-----NLTL-----QLNKLQENSKDLMEKISAGEGGAKMAIEQLEQEKVK 521

Human   740 -LDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKE-----ELDRGARR 798
             .:.|||..::.:...|||:.:         :.:.||.:.:|  :|:::.||     |.:...|:
 Worm   522 LTNELQTSSEKTKKASGELEAK---------ISELEKKLRDA--EASRTDKEQKWKQEKESFERK 575

Human   799 LEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 863
            |.|..:|.....|:..|       ..:.:::|......:..|:|:..:..:..:|..::::..::
 Worm   576 LAEAEDEIKRKGERFVE-------MEKEMEEERQKATDRTLKLKDALVNSEKNLETIKKESEDRE 633

Human   864 QLISE----LKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHRE--VAQVRQHMADLEGHL 922
            :::.|    |:..:||::..:::|.:      .|||..|.|.|...|:  |:.....:::|:|.|
 Worm   634 KIVREKDAHLEENKKRIEDAVQKLEE------AEKRARELEASVSSRDTTVSTKESELSELKGKL 692

Human   923 QSAQKERDEMETHLQSLQFDKEQMVAVTEAN---EALKKQIEELQQEARKAITEQKQKMRRLGSD 984
                                       ||:|   |.||.|:|::..|    |:|::|::..|.::
 Worm   693 ---------------------------TESNSFIEELKVQVEKVSNE----ISEKQQEVENLMAE 726

Human   985 LTSAQKEMKTKHKAY-----------ENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSL 1038
            :...:...|||...:           |.|...|....::.:..||.:..|..||          :
 Worm   727 MRDKEAHWKTKRDEFEAQMLRNQEDNEEASSTLKSVQEQLMKEKETSGEEKNQL----------I 781

Human  1039 ALHERIQALEAELQAVSHS---KTLLEKELQEVIALTSQELEESREKVLELEDELQ-ESRGFRKK 1099
            ::..:::.|:.|::.:..|   ||...::|:..:..|:||    |:::....:.|: |......|
 Worm   782 SVKSQLEELKTEVERLIRSEEEKTQEIEKLKSAVTATTQE----RDELTATSESLRTECENLNSK 842

Human  1100 IKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKE 1164
            |:.:|||.:       |.:.|    |..|         ||..:.::               .|.|
 Worm   843 IQSIEESRR-------HAEEK----GSEN---------LERMITEK---------------SRLE 872

Human  1165 EEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHL 1229
            ::..:.:..:|::|.:||.:..::.|||......:.|......|.::.:..:.|.:||:.:.:..
 Worm   873 KDIEERESTIQSIQEALETKDNEIESLKTTQRVVEDELVSKISHIESFNSRIEEFEKEMASGKRT 937

Human  1230 VQKLQA----EADDLQIREGKHSQ---EIAQFQAELAEARAQL------------------QLLQ 1269
            :::|:|    |.:.|.:..|..||   |:.:.|.|:.|....:                  |.|.
 Worm   938 IERLEAEKAEETEKLVVFTGTQSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLS 1002

Human  1270 KQLDEQL-----------SKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQ 1323
            |:::::.           |.:.|.:..:|.|:..:.|:||.::||:..|.......:::|:.||:
 Worm  1003 KEINDKTEEIERLMERIDSLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQK 1067

Human  1324 LLQNVKSELEMAQEDLSMTQKDKFML---------------------QAKVSELKNNMKTLLQQN 1367
            |    |.|.:..::..:|.|.:|.||                     :.:..:..:.|..|.:.|
 Worm  1068 L----KEEFDELKKAETMWQAEKDMLIERCLGSESDIEYEKERSQENKRRFDDALSAMHELGRAN 1128

Human  1368 QQLKLDLRRGAAKTRKEPKGEASSSNP-------ATPIKIPDCPV-------PASLLEELLRPPP 1418
            |.|::|..|.:::...:   :|.:.|.       :..::...|.|       |.|.....:    
 Worm  1129 QSLQIDADRYSSRKWLD---DAEAINCTECGKVFSLTVRKHHCRVCGKIYCNPCSSKSVRI---- 1186

Human  1419 AVSKEPLKNLNSC 1431
            |.:|.|::..|:|
 Worm  1187 ASAKNPVRACNTC 1199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GOLGA3NP_001376612.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..118
Interaction with GOPC. /evidence=ECO:0000269|PubMed:15951434 121..141
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..195
Golgi-targeting domain 172..257
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 216..325 14/51 (27%)
SMC_prok_B <393..743 CDD:274008 84/444 (19%)
Smc 630..1358 CDD:224117 162/826 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 789..809 7/24 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 974..993 2/18 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1376..1400 3/30 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1440..1498
eea-1NP_001024127.1 SMC_prok_B <98..468 CDD:274008 76/412 (18%)
Smc 329..1077 CDD:224117 177/898 (20%)
FYVE_EEA1 1141..1203 CDD:277269 11/66 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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