DRSC/TRiP Functional Genomics Resources

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Protein Alignment GOLGA3 and myo-5

DIOPT Version :9

Sequence 1:NP_001376612.1 Gene:GOLGA3 / 2802 HGNCID:4426 Length:1498 Species:Homo sapiens
Sequence 2:NP_505094.1 Gene:myo-5 / 179190 WormBaseID:WBGene00019064 Length:1974 Species:Caenorhabditis elegans


Alignment Length:1192 Identity:263/1192 - (22%)
Similarity:493/1192 - (41%) Gaps:293/1192 - (24%)


- Green bases have known domain annotations that are detailed below.


Human   395 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSS 459
            |.::...|..|:..:||:|: :.:.:.:...:||     |.|.|:|:..||..:|:.:.:.|...
 Worm   853 SKKNEEFEALEKKFKVLEEE-KTQEERKRKDMEA-----ENARLEAEKQALLIQLEQERDSSAEG 911

Human   460 QQRQDSLSSEVDTLKQSCWDLERAMTDLQNML---EAKNASLASSNNDLQVAEEQYQRLMAKVED 521
            ::|...|      |.|.. |||:.|.::.:.|   |.|||:|......:   |:..:.|...|.|
 Worm   912 EERSAKL------LAQKA-DLEKQMANMNDQLCDEEEKNAALTKQKKKI---EQDNEGLKKTVSD 966

Human   522 MQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISS--LQSVRQWYQQQLAL 584
            ::.::..:::.......|:.:||.::|. |.|..:..:|.|..|.|::.  |:.::         
 Worm   967 LETTIKKQESEKQAKDHQIRSLQDEIQS-QDEVISKLNKEKKHQEEVNRKLLEDIQ--------- 1021

Human   585 AQEARVRLQGEMAHIQVGQMTQAGLLEHLK--LENVSLSQQLTETQHRSMKEKGRIAAQL-QGIE 646
            |:|.:|.      |:...:......|:.|:  ||.....:|..|.|.|.::.:.:||.:| :.:.
 Worm  1022 AEEDKVN------HLNKTKAKLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELIEELN 1080

Human   647 ADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQ 711
            ....:||    |:.:.|.:....:|.|||:.:....:|||             |:| .||.|.|:
 Worm  1081 RHKHEQE----QVIKKKDIELSSIQSRLEDEQSLVAKLQR-------------QIK-ELLARIQE 1127

Human   712 LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKI 776
            ||          ::|...:.:....|::.:.:|...:||..||.|..|..               
 Worm  1128 LE----------EELDAERNSRSKAEKARNEMQMELEELGDRLDEAGGAT--------------- 1167

Human   777 ILEAALQAAKSGKEELDRGARRLEEG--TEETS-------------------ETLEKLREELA-- 818
              :|.::..|..:.||.:..:.||:.  ..|||                   :|::|:|.:|.  
 Worm  1168 --QAQIELNKKREAELAKLRQDLEDAAINSETSMAALRKKHNDAVAELSDQLDTIQKMRGKLERE 1230

Human   819 --IKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD----QLISELKATRKRLD 877
              .|..:|:.|||......||.|..:....|    :||...|.|.|.    :||.||...:.::.
 Worm  1231 KNDKQREVDELQQSADVEAKQRQNCERMAKQ----LEAQLTDMTLKSDEQARLIQELTMGKNKVH 1291

Human   878 SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFD 942
            :|.::|.::|       ..|||:|..|:|...|....:.:|:..|....:||..:.:.:.:.|.:
 Worm  1292 NENQDLNRQL-------EDAEAQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLE 1349

Human   943 --------KEQMVAVTEANEALKKQIEELQQEARK------AITEQKQKMRRLGSDLTSAQKEMK 993
                    :|:..|.|:....|.|...|:||...|      :..|:.::.||   .||...:||:
 Worm  1350 CEQFRESLEEEQDAKTDVQRQLSKANSEIQQWRAKFEGEGVSRAEELEETRR---KLTHKVQEMQ 1411

Human   994 TKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSK 1058
            .:.:.....:|.|.:..|.  .|.:..||::...||  .|..|||           |.:.....|
 Worm  1412 EQLENANQKIGTLEKNKQR--LAHDLEDAQVDADRA--NSIASSL-----------EKKQKGFDK 1461

Human  1059 TLLE--KELQEVIALTSQELEESREKVLE---LEDELQESRGFRKKIKRLEESNKKLALELEHEK 1118
            .|.|  ::.:.::|...|...|:|....|   |.::|:||....:.:||   .||.||.||   |
 Worm  1462 VLDEWRRKCEALVAEVEQSQRETRAAATETFRLRNQLEESGEQTEAVKR---ENKALAQEL---K 1520

Human  1119 GKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEK 1183
            .....||:...::.:                      :|.:.:|.|.|..:::..:...:.:||.
 Worm  1521 DIADQLGEGGKSVHD----------------------LQKMRRRLEIEKEELQQALDEAECALEA 1563

Human  1184 EKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHS 1248
            |:.||  ::.|:..:::.               ||::|.||.||          ::.:.....||
 Worm  1564 EEAKV--MRAQIEVSQIR---------------SEIEKRLQEKE----------EEFENTRKNHS 1601

Human  1249 QEIAQFQAEL-AEARAQLQLL--QKQLDEQLSKQPV-----------GNQEME-------NLKWE 1292
            :.|...|..| .|:|.:.:||  :|:|:..:::..:           |.:.|:       .|:::
 Worm  1602 RTIESMQVSLETESRGRAELLKTKKKLEGDVNELEIALDHSNKLNVDGQKSMKKLQDTIRELQYQ 1666

Human  1293 VDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFM----LQAKV 1353
            |::::|.:...:...:|.|::        .|:||..|.:|.:..|....|::...:    ::..|
 Worm  1667 VEEEQRSLSESRDHANLAERR--------SQVLQQEKEDLAIIYEQSERTRRQAELELAEVKDSV 1723

Human  1354 SELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKIPDCPVPASLLEELLRPPP 1418
            :||.|:...||...::::.||:...::. :|...:|.:|:......|.|    ||.|.:.||.  
 Worm  1724 NELSNSNSLLLATKRKVEGDLQLLQSEI-EEAMSDAKTSDEKAKKAIMD----ASKLADELRS-- 1781

Human  1419 AVSKEPLKNLNSCLQQLKQEMDSLQ---------------RQMEEHALTVHESLSSWTPLEPATA 1468
              .:|...|||...:.|:.::..||               ||:.:..:.:||   ..|.||    
 Worm  1782 --EQEHASNLNQSKKTLESQVKDLQMRLDEAEAAGIKGGKRQLAKLDMRIHE---LETELE---- 1837

Human  1469 SPVPPGGHAGPRGDPQRHSQSR 1490
                        |:.:||::::
 Worm  1838 ------------GENRRHAETQ 1847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GOLGA3NP_001376612.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..118
Interaction with GOPC. /evidence=ECO:0000269|PubMed:15951434 121..141
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..195
Golgi-targeting domain 172..257
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 216..325
SMC_prok_B <393..743 CDD:274008 81/355 (23%)
Smc 630..1358 CDD:224117 175/801 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 789..809 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 974..993 5/18 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1376..1400 3/23 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1440..1498 12/66 (18%)
myo-5NP_505094.1 Myosin_N 31..68 CDD:280832
Myosin_head 83..776 CDD:278492
MYSc_class_II 95..776 CDD:276951
Myosin_tail_1 853..1933 CDD:279860 263/1192 (22%)
DUF4795 954..1129 CDD:292662 47/208 (23%)
Prefoldin 1111..1243 CDD:298833 36/172 (21%)
Tmemb_cc2 <1212..1322 CDD:287269 32/120 (27%)
DUF881 1746..>1838 CDD:303034 24/119 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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