DRSC/TRiP Functional Genomics Resources

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Protein Alignment GOLGA3 and che-10

DIOPT Version :9

Sequence 1:NP_001376612.1 Gene:GOLGA3 / 2802 HGNCID:4426 Length:1498 Species:Homo sapiens
Sequence 2:NP_494819.3 Gene:che-10 / 173801 WormBaseID:WBGene00018051 Length:1955 Species:Caenorhabditis elegans


Alignment Length:1731 Identity:339/1731 - (19%)
Similarity:666/1731 - (38%) Gaps:480/1731 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   102 DNLRKSQGTSAEGSVRKE----ALQSLRLSLPMQETQLCSTDSPLPLEKEEQVRLQARKWLEEQL 162
            :.|.|.....|.|..|.|    ..:.:|..|..:..::  .:|....::.|:.|.:|:|.||::.
 Worm   361 EQLSKMAHEMAGGRGRNETPMDVARKMRKLLTTKNGEI--DESREAAKQAEKERDRAKKDLEKEE 423

Human   163 KQYRVKRQQE--RSSQPATKTRLFSTLDPELMLNPENLPRASTLAMTKEYSFLRTSVPRGPKVGS 225
            |:.:..|:.|  |||..:.:......||.||....|.:........::|.  |..||.     .|
 Worm   424 KRRKDDREAERKRSSVYSQREHDLKKLDDELRKASEKIRNLEEQRESQEK--LTISVQ-----NS 481

Human   226 LGLPAHPREKKTSKSSKIRSLADYRTEDSNAGNSGGNVPAPDSTKGSLKQNRSSAASVVSEISLS 290
            |. .||.:.|:..:...||    :|.|                    ||:...|.    .|...|
 Worm   482 LN-EAHRQHKQFIEELMIR----HREE--------------------LKEREDSH----EEALRS 517

Human   291 PDTDDRLENTSLAGDSVSEVDGNDSDSSSYSSASTRGTYGILSKTVGTQDTPYMVNGQEIPADTL 355
            .||::|         |..|.:.::.:.....|...|.|...|...|....|.  ::.:.:..|.|
 Worm   518 KDTEER---------SRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTD--LDDKTLRLDML 571

Human   356 -GQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSS---------------VSLESSAAETQ 404
             .:...:|..|: ...|..||......|.|::.|.:...               .::|......|
 Worm   572 ETERDELKKKLE-TEREQADQRDLEIAECRAKLDEMAEKEAELRKELAEFQAIITAMEGEGKLNQ 635

Human   405 EEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSE 469
            |:.|:...|...|..|:|:|:.|.....:|...|.|.|......:|.....||......:..:.|
 Worm   636 EQFLESKNELNTLTDQIESLNSEVENKNEEIRNLMATLQEKEVHIQNVRTSSHQLTATYEEANGE 700

Human   470 VDTLKQSCWDLERAMTDLQNMLEAKNASLASSN--------------NDLQVAEEQYQRLMAKVE 520
            :|.||..       :|.|...:..:...::.:|              .|:...:|:|::|..::|
 Worm   701 IDILKAE-------LTRLHEQVNERTRQISEANEKYDDAARKNDALLEDVATWQEKYEQLKMELE 758

Human   521 DMQR----------------------------SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTL 557
            :|.|                            .:..|..||..|.:::::|:.||.:.:.||.  
 Worm   759 EMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEISSLKEQLNKSEKERK-- 821

Human   558 TSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQ--GEMAHIQVGQMTQAG---LLEH--LKL 615
            ...|:..:.|..:...:::.|:.:|.||::.|..::  |:....::.::|:..   :.||  ||:
 Worm   822 EELLRMEELEQKNEAEMKEEYEVKLQLAEKDRQGVENFGKECEARMNELTKIHEMLMEEHDQLKV 886

Human   616 ENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFE-- 678
            :::...:::...:.:..||..::..|..|..|:..::.   .:::.:|.....:||.|:::.|  
 Worm   887 DHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNER---NRLESSKNEAVTELQERVQKLEDV 948

Human   679 ---------GERERLQRMADSAASLEQQLEQVKLTLLQRDQ----QLEALQQEHLDLMKQ----- 725
                     ..|..|:...:.:..|:.:|.:::||..::::    :.:.|.:|.:.||:|     
 Worm   949 VKEKEDKEIALRRDLEDSHEKSRDLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLMEQKEEAM 1013

Human   726 LTLTQEA-----------------------LQSREQSLDALQTHYDELQARLGELQGEAASRED- 766
            |..|:.|                       :..||.|::||:::..||.::|...:.|....:| 
 Worm  1014 LVATKHATTIDQQTRRISVLEGDVEKLTAGIAERESSINALESNTMELISKLETTEAELEKLKDE 1078

Human   767 -TICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLRE------ELAIKSGQV 824
             .:.|.||.::         |:|||.|   :.:..|..::..:..::|||      .:.:|:..:
 Worm  1079 LAVMLKQNSEL---------KNGKEGL---SEKWNEERKKIQDLADQLREANKVVHNMRMKNVNL 1131

Human   825 E----HLQQETAALKKQMQKIKEQFLQQKV-------MVEAYRRDATS------KDQL-ISELKA 871
            |    .|.|....|..::::::.|.:.:..       ::.....||.|      .:|. :::|:.
 Worm  1132 EEKKNELDQNVTDLTNKVRQLEIQLMDKAAKNEVSGDLLRKMEHDAQSMLKQAQNEQFRLTDLEK 1196

Human   872 TRKRLDSELKELRQELMQV-----------------------HGEKRTAEAEL--SRLHREVAQV 911
            .||.|..|.:.|..:|..|                       ..|::..:.||  .||..::|.|
 Worm  1197 VRKALQDENQRLVNDLATVKAAFEVKRETSKSAISDILDKYRSAEEKANKGELDNQRLRSDLATV 1261

Human   912 -----RQHM--ADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARK 969
                 ||.:  .|.:..|:.:||..:|:::.|.:||         ..|.|:|:..:....::.|.
 Worm  1262 TLKLERQELKAKDSDNRLRDSQKRFEEVQSKLANLQ---------KSAVESLQNPMSSNSRQNRS 1317

Human   970 AITEQKQKMRRLGSDLTSAQKEMKTK------------HKAYE-----NAVGILSRRLQEALAAK 1017
            ...:..:....:|.:..|.:..:::.            .:|.:     ::||:..|.|:|.:...
 Worm  1318 IYVDIPRAASSIGLNENSDEVPLRSSPSVRFADSSQNMQRAVDSMDVSSSVGVTLRFLKERIEQL 1382

Human  1018 EAADAELGQL--RAQGGSSDSSLALHER---IQALEAELQAVSHSKTLLEKEL--QEVIALTSQE 1075
            ||.:|:|...  :|:......:..|.:|   |:.:|.:|..::..:..:|..:  |..:.||::|
 Worm  1383 EADNADLSDALEKAKDELRQRNEKLADRQMVIERVERQLVHITEERNTIENRMTSQRQMYLTNEE 1447

Human  1076 LEESREKVLELEDELQESRGFRKKIKRLE----ESNKKLA-----LELEH--------EKGKLTG 1123
            ...|||         .|.|..:.:|..||    |...|||     :|:.|        .|.|.||
 Worm  1448 SSRSRE---------HEIRSMKARISTLELHLREKESKLAHLRKEIEVLHGQLHDALESKEKATG 1503

Human  1124 L-GQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRK--EEEDRQMKHLVQALQASLEKEK 1185
            | |..::..|:....|:.|..:||..:.:         ||:  .|.:...:.|.|     ||||:
 Worm  1504 LVGVQDSKHRDLEEQLDRANRERELAIGK---------QRRTLAENENLFRKLEQ-----LEKER 1554

Human  1186 EKV-------NSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQK----------- 1232
            |::       ..|.|:...:..|...:.|.:|:|   ::..||..:.:|..||:           
 Worm  1555 EQLMREITDERRLNERNRTSLEELRVSERTWKSA---MTTAKKPAEEQERAVQEQRRWEESNHEM 1616

Human  1233 ------LQAEADDLQIR------------------EGKHSQ-------------EIAQFQAEL-- 1258
                  |..|.|.|::.                  |.|:.:             .:.:|:.|.  
 Worm  1617 TNRNTALTKECDRLRVEMRDQLNRMNGINLRSVDFERKNEELSSKLIVMQNTVTAMKKFEEEWKR 1681

Human  1259 --AEARAQLQLLQKQ----------LDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLD-LT 1310
              ||.||:|::|:|:          |..:..:.....:|:|.::..:   ||||.:||:.:| |.
 Worm  1682 LEAEMRAELKILRKEKLMQTAEIEDLKRKSFRSDTEKKEIEGIRVRL---EREISALKRHVDALE 1743

Human  1311 EQQGR----------------KELEGL----QQLLQN---VKSELEMAQEDL---SMTQ--KDKF 1347
            |::|:                |.|..:    |||.:|   ::::::..:.|.   |:|:  |:..
 Worm  1744 EEKGKTEKAVRETMNERRAIDKSLASMERENQQLYRNCAQLQAQIQNLERDAGNRSVTKLAKEHS 1808

Human  1348 MLQAKVSEL---KNNMKTLLQQ------------NQQLKLDLRRGAAKTRKEPKGEASSSNPATP 1397
            :|:|:::.|   |..::::|.|            ..|::|...:..|:.||..||..::.     
 Worm  1809 LLEARIAALIEEKRQLQSMLDQKDANYSHKRKLLESQIQLLREQLEAERRKRTKGVVATG----- 1868

Human  1398 IKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQ--------EMDSLQRQMEEHALTVH 1454
                                |.||:..:::.::....:::        |...||.:..|:..|  
 Worm  1869 --------------------PTVSRRGVQHTSAFRHTIERHRSLSQSSERTILQERYLEYVYT-- 1911

Human  1455 ESLSSWTP-LEPATASPVPPGGHAGPRGDPQRHSQSRASKE 1494
               ...|| ::.....|:.|..|:|......|.::.|...:
 Worm  1912 ---GDRTPAIQMINTPPISPLSHSGSFNSDGREARIRRESD 1949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GOLGA3NP_001376612.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..118 4/15 (27%)
Interaction with GOPC. /evidence=ECO:0000269|PubMed:15951434 121..141 2/19 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..195 9/30 (30%)
Golgi-targeting domain 172..257 22/86 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 216..325 22/108 (20%)
SMC_prok_B <393..743 CDD:274008 80/456 (18%)
Smc 630..1358 CDD:224117 195/973 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 789..809 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 974..993 2/18 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1376..1400 5/23 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1440..1498 12/56 (21%)
che-10NP_494819.3 Rootletin <164..282 CDD:317452
SMC_N <294..797 CDD:330553 97/492 (20%)
SMC_N 568..>1297 CDD:330553 142/753 (19%)
SMC_N 1029..1791 CDD:330553 164/811 (20%)
ClpB_D2-small <1766..>1856 CDD:331348 17/89 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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