DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eif3b and eIF3b

DIOPT Version :9

Sequence 1:NP_598677.1 Gene:Eif3b / 27979 MGIID:106478 Length:803 Species:Mus musculus
Sequence 2:NP_611228.1 Gene:eIF3b / 36981 FlyBaseID:FBgn0034237 Length:690 Species:Drosophila melanogaster


Alignment Length:698 Identity:353/698 - (50%)
Similarity:479/698 - (68%) Gaps:32/698 - (4%)


- Green bases have known domain annotations that are detailed below.


Mouse   114 AEEEGGSDGSAAEAEPRALENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVV 178
            :||..|:|.:.::.:         :||:|.||..|||::|:|:||||:|..||.||||::||:||
  Fly     6 SEEHSGTDANDSDYQ---------EEPNFDDPPGFVDNISDEDLLGDMLAQRPSEADGVESVVVV 61

Mouse   179 DNVPQVGPDRLEKLKNVIHKIFSKFGKIINDYYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 242
            ||:|:|.|.||||||.||:|:||.:|:|:|..|| :|:||||||.|:||.....|.:|||..:.:
  Fly    62 DNIPKVEPVRLEKLKLVINKLFSNYGEIVNVVYPVDEEGKTKGYAFMEYKQARQAEEAVKKLNNH 126

Mouse   243 KLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSI 307
            :|||.|||.|||||||.||..|.::|:.|..|.||...:|..::.:.:..|||.|..|:......
  Fly   127 RLDKNHTFAVNLFTDFQKYENIPEKWEPPTVQTFKVQSDLYNFINDPDTYDQYCVAAETAPNCVQ 191

Mouse   308 --FWNDV-KDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGDKFKQIQRFSHQGVQLID 369
              ||.:| .:|..:|.|.|:|:|:|:|||.|||:.|||:.|:|:|||..|::||:|.|.|.|.::
  Fly   192 VGFWQNVLPEPFELETRERFTDTFVKWSPLGTYVVTFHKPGVAIWGGSSFQKIQKFPHPGTQFVE 256

Mouse   370 FSPCERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDT 434
            |||||.||||:.|    ....|.||||||.||.:||.|..:..:...:|:||||.||.|||..::
  Fly   257 FSPCENYLVTYGP----TPTGQKIIIWDIRTGAEKRSFVADGMSVLSMFRWSHDDKFVARMGENS 317

Mouse   435 LSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEIRVRNLF 499
            :.||||||..|||.||:||.||:.|||||..|:||:||.|...||||||||::|.::|||.:|||
  Fly   318 IHIYETPSFYLLDLKSIKIPGIRGFSWSPTDNVIAYWVEEQNQIPARVTLMEIPKKREIRNKNLF 382

Mouse   500 NVVDCKLHWQKNGDYLCVKVDRTPKGTQ----------GVVTNFEIFRMREKQVPVDVVEMKETI 554
            :|.||||||||:||||||||||..|..:          |:..|||||.||||::|||.||::|.|
  Fly   383 HVADCKLHWQKSGDYLCVKVDRYSKLKKDKKDLDVKFLGMFYNFEIFHMREKEIPVDSVEIRELI 447

Mouse   555 IAFAWEPNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRS 619
            :||||||.|:||:::|||....:||||.|....|..|:|..:|:....:||||:|||:|:|.|..
  Fly   448 LAFAWEPVGNKFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSCTHLFWSPRGQFIVMANLTM 512

Mouse   620 MNGALAFVD-TSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKN 683
              |...||| |:|..:....:|:.||:||||||||||||.||.|..|.|..:.::|||||::::.
  Fly   513 --GTFEFVDSTNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIKRT 575

Mouse   684 NKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRQ 748
            ....|.|.|||||||||||:::.|:|||:||||...|||||||..::|||||:|:|..:.|.|.:
  Fly   576 ILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELLEKRSQLRETFME 640

Mouse   749 YRKMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIEFFVTEEV 796
            ||......:.:||:.|:.|||.||||.|::  |:.:||.:||.|.|||
  Fly   641 YRNKRIAEWAEQKSRRIMLRGHVDTDNLET--DEVDEEIVEFLVKEEV 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eif3bNP_598677.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..147 9/32 (28%)
PHA03249 26..>148 CDD:223023 9/33 (27%)
Sufficient for interaction with EIF3E. /evidence=ECO:0000255|HAMAP-Rule:MF_03001 113..402 140/291 (48%)
Sufficient for interaction with EIF3J. /evidence=ECO:0000255|HAMAP-Rule:MF_03001 159..263 63/104 (61%)
RRM_eIF3B 173..253 CDD:240724 45/80 (56%)
COG5354 297..796 CDD:227657 262/512 (51%)
WD40 repeat 327..360 CDD:293791 19/32 (59%)
WD 2 361..406 23/44 (52%)
WD40 repeat 365..412 CDD:293791 23/46 (50%)
WD 3 410..448 18/37 (49%)
WD40 repeat 418..452 CDD:293791 21/33 (64%)
WD40 repeat 456..495 CDD:293791 23/38 (61%)
WD40 repeat 503..534 CDD:293791 21/40 (53%)
WD40 repeat 545..593 CDD:293791 25/47 (53%)
WD 4 549..590 21/40 (53%)
WD40 repeat 601..636 CDD:293791 16/35 (46%)
WD 5 638..683 25/44 (57%)
WD40 repeat 643..673 CDD:293791 19/29 (66%)
eIF3bNP_611228.1 WD40 <216..352 CDD:295369 75/139 (54%)
WD40 repeat 216..248 CDD:293791 18/31 (58%)
WD40 repeat 297..321 CDD:293791 10/23 (43%)
RRM_eIF3B 56..137 CDD:240724 45/80 (56%)
COG5354 194..690 CDD:227657 262/501 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846756
Domainoid 1 1.000 258 1.000 Domainoid score I1997
eggNOG 1 0.900 - - E1_COG5354
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2780
Inparanoid 1 1.050 703 1.000 Inparanoid score I658
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54076
OrthoDB 1 1.010 - - D262412at33208
OrthoFinder 1 1.000 - - FOG0003562
OrthoInspector 1 1.000 - - oto92880
orthoMCL 1 0.900 - - OOG6_101924
Panther 1 1.100 - - LDO PTHR14068
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R377
SonicParanoid 1 1.000 - - X2436
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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