DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp9 and U3-55K

DIOPT Version :9

Sequence 1:NP_663595.1 Gene:Rrp9 / 27966 MGIID:2384313 Length:475 Species:Mus musculus
Sequence 2:NP_001014529.1 Gene:U3-55K / 3346176 FlyBaseID:FBgn0053505 Length:484 Species:Drosophila melanogaster


Alignment Length:483 Identity:202/483 - (41%)
Similarity:293/483 - (60%) Gaps:48/483 - (9%)


- Green bases have known domain annotations that are detailed below.


Mouse    17 PGAAPVAGKRRRKVDSAADRGK--SKGG--GKM------------------NEEISSDSE----- 54
            |||   .|.::||..:|..:||  .|||  ||.                  :|||:||.|     
  Fly     9 PGA---KGTKKRKNPAATTKGKPLKKGGKPGKSTPAAGGPVPKKQRRPKEEDEEIASDDEEYNSD 70

Mouse    55 ----SESLAPRKTEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKED 115
                ..:||....|.|     |||.|:|:|||||.||.::.:||.|:||.|...: .|..||:.:
  Fly    71 LGGDDNTLAFSSDEGE-----EETPQDKRLRLAKQYLSEIEKQEAERAEDRELAQ-SVEQRLQTE 129

Mouse   116 VLEQRGRLQKSVAKEIQAPAPTDIRVLRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVETGR- 179
            .|:..|:|::::|..::|...:.|...:.|...|..|.::||...:::.||...::||..|||: 
  Fly   130 YLDSVGKLRRNIAGSLKACESSRILKHKLHHTPICALALSPDGKFLYTGAKSQFLLKWCTETGKV 194

Mouse   180 --KLHVIPRAKKGAQGQPAGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRD 242
              |..|:...::...|:.  ..|||:.:.:|||.||||..:....|.||..|:.:|:.|..||||
  Fly   195 LEKSDVLSHREEPETGKK--RRSHVISICLSSDMKYLALAEGGPHIQIWCPQTMKHIKTLKGHRD 257

Mouse   243 AVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTV 307
            :|:||.||||||.|||.:.|||||:|:..|.:|||:|||||.||.::||||||..:||||.|.::
  Fly   258 SVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSL 322

Mouse   308 RVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLHGEPG 372
            |:|||.|||||::.||:.||:|:..||:||.|||..||::.||...||:|:...:.|||: ||.|
  Fly   323 RIWKITEESQLIYNGHKDSIECVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGV-GENG 386

Mouse   373 LEQPFWVSSVAALLNTDLVATGSHNARVRLWQCGEGFRQLDPLCDIPLVGFINSLKFSSAGDFLV 437
            :..  |::::|.::|||||||||.:..|||||.....|:::.:..|.:.||||.|.|::.|..|.
  Fly   387 VAN--WITAIAVVVNTDLVATGSCDGCVRLWQTNPNARKMNLIQSISIAGFINGLAFNADGSKLF 449

Mouse   438 AGVGQEHRLGRWWRIKEARNSVCIIPLR 465
            ...|||||||||||:|||:|.|.::.::
  Fly   450 VATGQEHRLGRWWRLKEAKNQVVVLDVK 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp9NP_663595.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..75 26/88 (30%)
Nuclear localization signal. /evidence=ECO:0000255 8..40 9/24 (38%)
WD40 <136..403 CDD:225201 123/269 (46%)
WD40 139..439 CDD:238121 136/302 (45%)
WD 1 144..183 13/41 (32%)
WD40 repeat 149..197 CDD:293791 14/50 (28%)
WD 2 197..236 15/38 (39%)
WD40 repeat 203..239 CDD:293791 13/35 (37%)
WD 3 239..278 25/38 (66%)
WD40 repeat 244..280 CDD:293791 22/35 (63%)
WD 4 281..320 25/38 (66%)
WD40 repeat 287..320 CDD:293791 20/32 (63%)
WD 5 322..360 19/37 (51%)
WD40 repeat 327..363 CDD:293791 16/35 (46%)
WD 6 374..413 17/38 (45%)
WD40 repeat 379..421 CDD:293791 17/41 (41%)
WD 7 419..460 23/40 (58%)
WD40 repeat 424..449 CDD:293791 13/24 (54%)
U3-55KNP_001014529.1 Upf2 55..>125 CDD:281974 29/75 (39%)
WD40 <150..484 CDD:225201 152/333 (46%)
WD40 156..416 CDD:295369 123/264 (47%)
WD40 repeat 163..203 CDD:293791 13/39 (33%)
WD40 repeat 218..254 CDD:293791 13/35 (37%)
WD40 repeat 259..295 CDD:293791 22/35 (63%)
WD40 repeat 302..336 CDD:293791 20/33 (61%)
WD40 repeat 342..379 CDD:293791 16/36 (44%)
WD40 repeat 391..431 CDD:293791 16/39 (41%)
WD40 repeat 436..461 CDD:293791 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837948
Domainoid 1 1.000 59 1.000 Domainoid score I10657
eggNOG 1 0.900 - - E1_KOG0299
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3452
Inparanoid 1 1.050 358 1.000 Inparanoid score I2211
Isobase 1 0.950 - 0 Normalized mean entropy S1798
OMA 1 1.010 - - QHG54739
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004346
OrthoInspector 1 1.000 - - oto92857
orthoMCL 1 0.900 - - OOG6_102033
Panther 1 1.100 - - LDO PTHR19865
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1935
SonicParanoid 1 1.000 - - X3065
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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