Sequence 1: | NP_001261571.1 | Gene: | Dscam4 / 2769008 | FlyBaseID: | FBgn0263219 | Length: | 1935 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996816.3 | Gene: | USH2A / 7399 | HGNCID: | 12601 | Length: | 5202 | Species: | Homo sapiens |
Alignment Length: | 2129 | Identity: | 427/2129 - (20%) |
---|---|---|---|
Similarity: | 683/2129 - (32%) | Gaps: | 740/2129 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 RAETSQFVNGLDLQGPIFLHEPPHRVEFS-----NNSGGLIECSGH-----GSPPP--------- 62
Fly 63 -EVEWTPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSREVHVRGVVN 126
Fly 127 QKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYI 191
Fly 192 NNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLP 256
Fly 257 CIAQGHPVPTYRWFKEENEQLL----PLQLSERITIVSAGLLKITKARLEDSG-------KYLCW 310
Fly 311 VNNTAG-EETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRD- 373
Fly 374 -----------------NRVEILTDPPRLIIKKVQKEDPGMYQCFVS--NEWEQIQST------- 412
Fly 413 -AELQLGDASPEL---------LYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDG-FPIPDSS 466
Fly 467 RFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPYIREMPKITGI 531
Fly 532 SGSDLIV-----KCP---VAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRLEDAGTYT 588
Fly 589 CMAQNKQKQTS-------RRNVEI---QVLVPP---------KIMPIQAMTNMLREGMR------ 628
Fly 629 -----AAISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIA 688
Fly 689 SNVAGTERFTVPLTVNVPPKWILEPKDSSAQ--AGADVL---LHCQSSGYPTPTITWKKAIGPTP 748
Fly 749 GEYKDFLYEPTVQLFPNG--------TIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPA 805
Fly 806 HFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWKIQATQQYLDESLDSRYTIRDQVLDDGMVSEL 870
Fly 871 GISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSP 935
Fly 936 IEEYHIYYKQISDIWQNAEHLTIAG-----AQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVV 995
Fly 996 QVTTLEEVPSG--PPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYV----GYQ----MSLTP 1050
Fly 1051 EDKE-VNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDV 1114
Fly 1115 PSS--PPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETDPEVVKSTNQYVT 1177
Fly 1178 IENLRKYTNYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIP----ASSSKIIISWLPP 1238
Fly 1239 DLPNGDITGYTFYMS---MLEGGREEG--THKRLLGPFVEMHETVRTQESATYQFWLTASTKMGE 1298
Fly 1299 GEKTQVVTVPPNNKVPARIVSFSQRIVTPWKEHL----------ELPCR-----KVGAPAPVTIW 1348
Fly 1349 RQDGHNMETSARKTIAKNGT------LYMKECQASDAGNYTCSVENTWGKDEIVYNIVVKVPPEA 1407
Fly 1408 P---NLTVINAYTDSLL-LEWMDNSHGGSPILGYVINYKRDNGDWEE--LQVDSKTTSHLL---T 1463
Fly 1464 NLWCGTRYQLYITAYNKIGTGLPCDIVNS-----YTKGNPPVQ-PKHSQMITNNSTSVTCWLDSW 1522
Fly 1523 GDGGCGILYFMIESRVYGRSSWAVVSNHIP-------PTERIYTVS---------DLVPGTKYQL 1571
Fly 1572 KVTAHNNAG--------------STTAIYNFTT----------------LSTQGVIYN-NDHSTP 1605
Fly 1606 VSHLSDLPFYANFKLLLPICFSLLMLLALIGAALF------LRKRKLASQARLASS-----SMSE 1659
Fly 1660 SPSLANLQNKQNRDQQYLAV-RCNPGTSAPRGSNSNDSGSFGKAEGNEYIE-DICPYATFQLNKQ 1722
Fly 1723 TYSESSYSGNVYSGPYHSVRGSFVYHDVKPESYHSKEPEYTKVRRKVGRLRDPHSESQESDNPGS 1787
Fly 1788 TDSEVRKILTLHI-------PITEYDTLG----------SESDNDVSARALNSAKYRAQRD---- 1831
Fly 1832 -----------TQDE--------------TSSSSETT-PTSMTRKSKPP 1854 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam4 | NP_001261571.1 | Ig | 31..124 | CDD:416386 | 26/112 (23%) |
Ig strand A | 32..35 | CDD:409353 | 1/2 (50%) | ||
Ig strand A' | 41..45 | CDD:409353 | 2/3 (67%) | ||
Ig strand B | 48..57 | CDD:409353 | 2/8 (25%) | ||
Ig strand D | 75..78 | CDD:409353 | 0/2 (0%) | ||
Ig strand E | 83..88 | CDD:409353 | 0/4 (0%) | ||
Ig strand F | 101..109 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 112..124 | CDD:409353 | 4/11 (36%) | ||
Ig | 235..326 | CDD:416386 | 24/102 (24%) | ||
Ig strand A | 235..238 | CDD:409353 | 1/2 (50%) | ||
Ig strand A' | 244..248 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 251..258 | CDD:409353 | 2/6 (33%) | ||
Ig strand C | 266..271 | CDD:409353 | 1/4 (25%) | ||
Ig strand C' | 276..279 | CDD:409353 | 2/6 (33%) | ||
Ig strand D | 285..289 | CDD:409353 | 0/3 (0%) | ||
Ig strand E | 292..298 | CDD:409353 | 0/5 (0%) | ||
Ig strand F | 305..313 | CDD:409353 | 3/14 (21%) | ||
Ig strand G | 316..326 | CDD:409353 | 2/10 (20%) | ||
IgC2_3_Dscam | 329..417 | CDD:409549 | 21/115 (18%) | ||
Ig strand B | 347..351 | CDD:409549 | 1/3 (33%) | ||
Ig strand C | 360..364 | CDD:409549 | 2/3 (67%) | ||
Ig strand E | 383..387 | CDD:409549 | 0/3 (0%) | ||
Ig strand F | 397..402 | CDD:409549 | 1/4 (25%) | ||
Ig strand G | 410..413 | CDD:409549 | 1/10 (10%) | ||
IgI_4_Dscam | 422..516 | CDD:409548 | 20/103 (19%) | ||
Ig strand B | 439..443 | CDD:409548 | 1/3 (33%) | ||
Ig strand C | 452..456 | CDD:409548 | 0/3 (0%) | ||
Ig strand E | 482..486 | CDD:409548 | 0/3 (0%) | ||
Ig strand F | 496..501 | CDD:409548 | 2/4 (50%) | ||
Ig strand G | 509..512 | CDD:409548 | 0/2 (0%) | ||
IgI_5_Dscam | 520..607 | CDD:409550 | 20/104 (19%) | ||
Ig strand B | 536..540 | CDD:409550 | 1/8 (13%) | ||
Ig strand C | 549..553 | CDD:409550 | 0/3 (0%) | ||
Ig strand E | 571..575 | CDD:409550 | 1/3 (33%) | ||
Ig strand F | 586..591 | CDD:409550 | 1/4 (25%) | ||
Ig strand G | 600..603 | CDD:409550 | 0/2 (0%) | ||
Ig | 610..703 | CDD:416386 | 20/112 (18%) | ||
Ig strand A | 611..613 | CDD:409353 | 1/10 (10%) | ||
Ig strand A' | 620..624 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 627..636 | CDD:409353 | 1/19 (5%) | ||
Ig strand C | 641..648 | CDD:409353 | 1/6 (17%) | ||
Ig strand C' | 650..652 | CDD:409353 | 0/1 (0%) | ||
Ig strand D | 659..664 | CDD:409353 | 0/4 (0%) | ||
Ig strand E | 668..675 | CDD:409353 | 1/6 (17%) | ||
Ig strand F | 682..690 | CDD:409353 | 4/7 (57%) | ||
Ig strand G | 693..702 | CDD:409353 | 0/8 (0%) | ||
IgI_7_Dscam | 706..801 | CDD:409546 | 15/107 (14%) | ||
Ig strand B | 724..728 | CDD:409546 | 1/6 (17%) | ||
Ig strand C | 737..741 | CDD:409546 | 0/3 (0%) | ||
Ig strand E | 766..770 | CDD:409546 | 3/11 (27%) | ||
Ig strand F | 780..785 | CDD:409546 | 1/4 (25%) | ||
Ig strand G | 794..797 | CDD:409546 | 0/2 (0%) | ||
Ig | 818..904 | CDD:416386 | 14/85 (16%) | ||
putative Ig strand B | 820..827 | CDD:409353 | 0/6 (0%) | ||
putative Ig strand C | 835..841 | CDD:409353 | 0/5 (0%) | ||
putative Ig strand C' | 853..856 | CDD:409353 | 0/2 (0%) | ||
putative Ig strand D | 862..866 | CDD:409353 | 0/3 (0%) | ||
putative Ig strand E | 868..874 | CDD:409353 | 1/5 (20%) | ||
putative Ig strand F | 881..889 | CDD:409353 | 3/7 (43%) | ||
putative Ig strand G | 892..902 | CDD:409353 | 0/9 (0%) | ||
FN3 | 906..999 | CDD:238020 | 22/97 (23%) | ||
FN3 | 1006..1110 | CDD:238020 | 26/114 (23%) | ||
fn3 | 1117..1203 | CDD:394996 | 24/87 (28%) | ||
FN3 | 1215..1307 | CDD:238020 | 21/100 (21%) | ||
Ig | <1334..1401 | CDD:416386 | 13/77 (17%) | ||
Ig strand C | 1345..1349 | CDD:409353 | 0/3 (0%) | ||
Ig strand D | 1363..1366 | CDD:409353 | 0/2 (0%) | ||
Ig strand E | 1367..1372 | CDD:409353 | 1/10 (10%) | ||
Ig strand F | 1380..1388 | CDD:409353 | 3/7 (43%) | ||
Ig strand G | 1394..1401 | CDD:409353 | 0/6 (0%) | ||
FN3 | 1405..1494 | CDD:238020 | 26/102 (25%) | ||
FN3 | 1499..1580 | CDD:238020 | 21/97 (22%) | ||
USH2A | NP_996816.3 | LamGL | 146..283 | CDD:214722 | |
Laminin_N | 291..516 | CDD:413488 | |||
EGF_Lam | 517..565 | CDD:238012 | |||
EGF_Lam | 574..639 | CDD:238012 | |||
Laminin_EGF | 641..691 | CDD:395007 | |||
EGF_Lam | 694..733 | CDD:214543 | |||
Laminin_EGF | 747..795 | CDD:395007 | |||
EGF_Lam | 794..844 | CDD:238012 | |||
EGF_Lam | 847..897 | CDD:214543 | |||
EGF_Lam | 900..948 | CDD:238012 | |||
EGF_Lam | 950..1000 | CDD:238012 | |||
EGF_Lam | 1001..>1037 | CDD:238012 | |||
fn3 | 1058..1132 | CDD:394996 | |||
fn3 | 1150..1227 | CDD:394996 | |||
FN3 | 1242..1357 | CDD:238020 | |||
FN3 | 1368..1451 | CDD:214495 | |||
LamG | 1519..1678 | CDD:238058 | |||
LamG | 1716..1868 | CDD:238058 | |||
FN3 | 1956..2051 | CDD:238020 | |||
FN3 | 2241..2313 | CDD:238020 | |||
FN3 | 2329..2428 | CDD:238020 | |||
FN3 | 2432..2528 | CDD:238020 | |||
FN3 | 2533..2619 | CDD:238020 | |||
FN3 | 2621..2719 | CDD:238020 | 10/43 (23%) | ||
FN3 | 2724..2799 | CDD:238020 | 23/140 (16%) | ||
FN3 | 2818..2920 | CDD:238020 | 28/116 (24%) | ||
FN3 | 2925..3015 | CDD:238020 | 19/106 (18%) | ||
FN3 | 3026..>3087 | CDD:238020 | 16/68 (24%) | ||
FN3 | <3449..3494 | CDD:238020 | 13/48 (27%) | ||
FN3 | 3503..3586 | CDD:238020 | 25/113 (22%) | ||
FN3 | 3590..3676 | CDD:238020 | 27/96 (28%) | ||
FN3 | 3680..3767 | CDD:238020 | 21/99 (21%) | ||
fn3 | 3777..3856 | CDD:394996 | 15/90 (17%) | ||
FN3 | 3866..3960 | CDD:238020 | 26/100 (26%) | ||
FN3 | 3964..4057 | CDD:238020 | 24/105 (23%) | ||
fn3 | 4161..4247 | CDD:394996 | 24/138 (17%) | ||
FN3 | 4268..4351 | CDD:238020 | 16/88 (18%) | ||
fn3 | 4357..4428 | CDD:394996 | 427/2129 (20%) | ||
FN3 | 4444..4516 | CDD:238020 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 4518..4541 | ||||
FN3 | 4529..4627 | CDD:238020 | |||
FN3 | 4636..4730 | CDD:238020 | |||
FN3 | 4826..4927 | CDD:238020 | |||
PDZ-binding | 5200..5202 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |