DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and ush2a

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:1976 Identity:392/1976 - (19%)
Similarity:652/1976 - (32%) Gaps:635/1976 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 NGLDLQGPIF---LHEPPHRVEFSNNSGGLIECSGHGSPPPEV----EWTPIPPQQDMVFQLSNG 82
            ||:.::..:|   |:|.............:...||..:|.|.:    |....||:..:|  :|| 
Zfish  1285 NGIIIRYELFMQLLNELQRNASSYGTEQRVFLSSGWLNPRPSLSSANENALTPPESTVV--VSN- 1346

  Fly    83 SMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLS------------------------------- 116
               ..||:.  ||..| .||      |:.|:|||                               
Zfish  1347 ---LQPFST--YRFRV-LTV------NMAGSVLSDWAVGRTAEGVPEYMAPPQVSAVSSSSLRVS 1399

  Fly   117 ----REVHVRGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDI 177
                |:..|||.|.: |.|.:|.|.:.......:..||                    ||..:..
Zfish  1400 WETPRDKDVRGEVTE-YRVNLHQEQMSNPYAPPIVTQV--------------------LYSGSAQ 1443

  Fly   178 GGKYTVLSNGELYINNAGPNDAYK--SYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVE 240
            ...||           ||...||:  |:|....|| .|.|..|...||.:.:.|.|:..|.:...
Zfish  1444 EHSYT-----------AGGLKAYEEYSFTVTVCNR-QGCVSSSPASGRTLPSAPAGLRAPGLRPL 1496

  Fly   241 KHSMRHVV------LNGQTTLPCI---------AQGHPVPTYR-----WFK------EENEQLLP 279
            ..:..:|.      |||...|..:         |||..:...|     :|:      ..|.....
Zfish  1497 NMTAMNVFWDAPAELNGPPPLYHVERTDVSLSDAQGQVIRGRRFTGSGFFRFPSATLPVNADFTG 1561

  Fly   280 LQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAH-------LQPQ 337
            ||||.| |....|||....               :.||:...|:|.:      |       ..||
Zfish  1562 LQLSFR-TRAEEGLLLFAV---------------SPGEQEEYVALQI------HNGRPYFLFDPQ 1604

  Fly   338 VQTVDVDKDAQFQCIVSGHPVHDVNWLH-------------------------DGKPILRDNRVE 377
            ...|.:.....     .|...:|..|.|                         .|..|:..|...
Zfish  1605 ASAVALSPRND-----GGRRYNDNQWHHLIATRKQAVGTIIVDNQYSGSASATSGSTIIGQNTGV 1664

  Fly   378 ILTDPPR--LIIKK--------------------VQKEDPGMYQCFVSNEWEQIQSTAE-LQLGD 419
            .:...|.  .|:::                    |||.. |..:.:...:||....|.| .:..:
Zfish  1665 FIGGIPENFTILRQDAGQAKLVQQGFAGCLRDVLVQKSS-GANEAWEPLDWESALETHETYESWE 1728

  Fly   420 ASPEL----LYWFSEQTLQPGPTVSLKCVATG---------------NPLPQFTWSLDGFPIPDS 465
            ..|.:    .|:.....|:..|.     :.||               |.|..|.:.:||      
Zfish  1729 GCPAVSENGAYFLGHGFLKVKPE-----ILTGGNYFEISFEFKTDQLNALLLFAYDIDG------ 1782

  Fly   466 SRFLVGQY-------------VTIHDDV---------------------ISHVNISNVKEED--- 493
            ..|::.:.             .|:...|                     ::...::::.|::   
Zfish  1783 KDFILAELQGGVLFWVLRWGEQTVELSVWVGLSYCDGGWNTLSVLKRGHLASAGLNDMYEQERKA 1847

  Fly   494 -GGEYTCTAQNAIG----KVSHSAKVNIYGLPY-----IREM-----PKIT-------------- 529
             ||..|.::...||    .|:|.| :|.:.|.:     ||::     |.::              
Zfish  1848 IGGPLTISSPLYIGGVPPGVTHPA-LNKHSLLHGFGGCIRDVRLARGPVVSLAAVSSSAVRVNLD 1911

  Fly   530 GISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTL--IIEQLQRLEDAGTYTCMAQ 592
            |...:|..|.|            ..:...|....|.|:..:.||  ..|.|.|:..:|....:..
Zfish  1912 GCLSADTSVNC------------RGNDSILVYTGRDRSAEDLTLQPFTEYLYRVMASGEGGWIGG 1964

  Fly   593 NKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTG 657
            ..|:..||..|...||.|.::..:...:                     |...||...       
Zfish  1965 PWQRGRSRETVPQSVLPPSRVGSVNGSS---------------------VEVSWEEPA------- 2001

  Fly   658 NEVFRRLDEYSASLVIEHISSD------------HSGNYTCIASNVAGTERFTVPLTVNVPPKWI 710
             ||...:::|    |::..|.|            ||.:.|...|.:|....:::.||        
Zfish  2002 -EVRGVIEKY----VLKAYSRDRPSSSPISATFPHSQHLTGTLSGLAPFSSYSITLT-------- 2053

  Fly   711 LEPKDSSAQAGADVLLHCQSS----GYPTPTITWKKAIGPTPGEYKDFL-----YEP-----TVQ 761
                 :..|||      |..|    |:.||....::...|....|.:.|     :.|     .:|
Zfish  2054 -----ACTQAG------CSESPFATGFNTPQEAPEEVPPPAAVSYPNSLSVHWNHPPKPNGIIIQ 2107

  Fly   762 --LFPNGTIFFKKISKE----SQGHF-----LCEAKNNIG-SGVSKVIFLKVNVPAHFQTKTKQI 814
              |:.|.|:.::..|..    ..|.|     |..|....| :..::|......:|..: .:...:
Zfish  2108 YILYKNNTVLYRGNSTSFNITDVGVFTPHKLLLSACTEAGCTNSTQVTLFTGQLPPTY-VEPPIL 2171

  Fly   815 SVAKGKQVHVQ--CNVQGDNPIDF----KWKI--QATQQYLDESLDSRYTIRDQVLDDGMVSELG 871
            :|...:.:|:|  ..|:.:..::|    :|.:  :....|....|...||:|:.|        .|
Zfish  2172 TVLDARSIHIQWAAPVEVNGLLEFYTLHQWALGEEPLIVYNSSELFQDYTVRNLV--------PG 2228

  Fly   872 ISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPI 936
            .::.::    |..|........|. |.....:..||:.....|.|....||.|:|:.|...|..|
Zfish  2229 STYLFQ----IAACTGGGCTLSDP-STARTEESSPEEVPAPNILSLSPHSLHLSWTPPRKPNGVI 2288

  Fly   937 EEYHIYY------------KQISDI--WQ---------NAE-------------------HLTI- 958
            ..|.::.            .::.|:  |.         .|:                   |:|: 
Zfish  2289 SSYGLWMDGTLVQNSSLMASEVGDLSPWSLHSFRVQACTAQGCALGPLVESRTLEMPPVGHVTLV 2353

  Fly   959 --------------AGAQ-------TV-------------------------------INIQQLR 971
                          |.|:       ||                               ::|..|.
Zfish  2354 VFSETPHSVRAKWEAPAEPNGNLTYTVLFAGPGQNFSSLDTPDTEMRELLSTGKEGQWVSIGGLL 2418

  Fly   972 PAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPP---LAVRAEPKSSTEIFVTWDAPERDHW 1033
            |...|.:.:.|.|.||..| |..|.|:    :|.|.|   ||.|....:.|.:.|:|.||.|.:.
Zfish  2419 PYSNYSVMVKACNSLGCVE-SSPVSVS----LPPGAPDGLLAPRLAAATPTSLQVSWAAPARHNA 2478

  Fly  1034 NGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQG 1098
            .| .|.|.:..:.|.:.:..::...:..:|      ||     .:.:|..||:||..:....|.|
Zfish  2479 PG-ALRYRLQMRSSASTQLHQLMDDETTTF------SH-----TVTDLEPFTEYHFRLLVSNSYG 2531

  Fly  1099 SGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYE 1163
            . ..|..:::.|.:|.|.: .:.|....:.|.|.:|:||||  ...||.|..|.::  ...:|..
Zfish  2532 E-TSSPWVSLFTAQDRPGA-VDPPVLSDIQSRSAFISWSPP--SQPNGIITHYNIY--QNRQLTT 2590

  Fly  1164 TDPEVVKSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFYCRT----HEDVPSAPQAIKAI 1224
            :.||  .||:.  .:.:|..:..||:.|.|.|..|..:..:.....|    .|||| |||.....
Zfish  2591 SVPE--NSTSH--MLSHLTPFQQYTIQVEACTAAGCTLSAESHTINTPPAPPEDVP-APQLYSDT 2650

  Fly  1225 PASSSKIIISWLPPDLPNGDITGYTFYMSMLEGGREEGTHKRLLGPFVEMHETVRTQES------ 1283
            |.|   :::||..|.|.||::.|||...      |..||.:......::.::|:...:|      
Zfish  2651 PTS---VLLSWAAPRLVNGELDGYTVER------RVSGTQEISTVATIQPNQTLTYLDSSATLSP 2706

  Fly  1284 -ATYQFWLTASTKMGEGEKTQV---VTVPPNN----KVPARIVSFSQRIVTPWKEHL----ELPC 1336
             ::|::.:.|.|::| |..:.|   ||..|:.    :.|..:|...:.:...|...|    |:..
Zfish  2707 WSSYEYRIVAHTRLG-GSNSSVWEKVTTRPSRPAGMQPPDGVVLGPESVQVTWAAPLIPNGEIER 2770

  Fly  1337 RKVGAPAPVTIWRQDGHNMETSARKTIAKNG----TLYMKECQASDAGNYTCSVENTWGKDEIVY 1397
            .::..|.|    |....||   :..|...:|    |.|.....|...|.     .:..|..|.:.
Zfish  2771 YEIRMPEP----RIPHTNM---SLLTHTVSGLMPYTGYSITILACSGGG-----GHVGGCTESLP 2823

  Fly  1398 NIVVKVP--PEAPNLTVINAYTDSLL-LEWMDNSHGGSPILGYVINYKRDNGDWEELQVDSKTTS 1459
            .:|..:|  |:..:...:.|.::|.| :.|...|....|.:.:.:..::..   :.|........
Zfish  2824 TLVTTLPTIPQGLSPLSVVAISESFLAVSWQLPSRPNGPNIRFELLRRKTQ---QPLASRPPEDF 2885

  Fly  1460 HLLTNLWCGTR-------------YQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITNN 1511
            :|..|::.||:             |:..|..:|.:|:. ..::....|....|::|.:......|
Zfish  2886 NLWYNVYAGTKLFHEDKGLSRYTWYEYKIVVHNDVGSA-SGEVATGVTLAGQPLKPTNISAHALN 2949

  Fly  1512 STSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNH------IPPTERIYTVSDLVPGTKYQ 1570
            .|::   |.:|.......|...:|..:.     .|||:.      :.||.....:.||.|.|:|:
Zfish  2950 HTAI---LVNWTTPTLQDLQGSVEVYIL-----TVVSDQHSQTLTLDPTVTSVFIPDLQPSTQYK 3006

  Fly  1571 LKVTAHNNAGS-TTAIYNFTTLSTQG 1595
            |.:|..|...: |:...|.||  |.|
Zfish  3007 LSLTVSNGPHNITSPEVNCTT--TDG 3030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 28/134 (21%)
Ig strand A 32..35 CDD:409353 1/5 (20%)
Ig strand A' 41..45 CDD:409353 0/3 (0%)
Ig strand B 48..57 CDD:409353 1/8 (13%)
Ig strand D 75..78 CDD:409353 1/2 (50%)
Ig strand E 83..88 CDD:409353 0/4 (0%)
Ig strand F 101..109 CDD:409353 2/7 (29%)
Ig strand G 112..124 CDD:409353 7/46 (15%)
Ig 235..326 CDD:416386 25/116 (22%)
Ig strand A 235..238 CDD:409353 1/2 (50%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 1/9 (11%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 2/3 (67%)
Ig strand E 292..298 CDD:409353 3/5 (60%)
Ig strand F 305..313 CDD:409353 0/7 (0%)
Ig strand G 316..326 CDD:409353 4/9 (44%)
IgC2_3_Dscam 329..417 CDD:409549 21/142 (15%)
Ig strand B 347..351 CDD:409549 0/3 (0%)
Ig strand C 360..364 CDD:409549 1/3 (33%)
Ig strand E 383..387 CDD:409549 1/5 (20%)
Ig strand F 397..402 CDD:409549 0/4 (0%)
Ig strand G 410..413 CDD:409549 0/2 (0%)
IgI_4_Dscam 422..516 CDD:409548 23/154 (15%)
Ig strand B 439..443 CDD:409548 0/3 (0%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 1/4 (25%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 20/112 (18%)
Ig strand B 536..540 CDD:409550 1/3 (33%)
Ig strand C 549..553 CDD:409550 0/3 (0%)
Ig strand E 571..575 CDD:409550 2/5 (40%)
Ig strand F 586..591 CDD:409550 0/4 (0%)
Ig strand G 600..603 CDD:409550 1/2 (50%)
Ig 610..703 CDD:416386 16/104 (15%)
Ig strand A 611..613 CDD:409353 0/1 (0%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 0/8 (0%)
Ig strand C 641..648 CDD:409353 2/6 (33%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 2/4 (50%)
Ig strand E 668..675 CDD:409353 1/6 (17%)
Ig strand F 682..690 CDD:409353 1/7 (14%)
Ig strand G 693..702 CDD:409353 0/8 (0%)
IgI_7_Dscam 706..801 CDD:409546 23/120 (19%)
Ig strand B 724..728 CDD:409546 0/3 (0%)
Ig strand C 737..741 CDD:409546 0/3 (0%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 2/9 (22%)
Ig strand G 794..797 CDD:409546 0/2 (0%)
Ig 818..904 CDD:416386 16/93 (17%)
putative Ig strand B 820..827 CDD:409353 2/8 (25%)
putative Ig strand C 835..841 CDD:409353 2/11 (18%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 1/5 (20%)
putative Ig strand F 881..889 CDD:409353 2/7 (29%)
putative Ig strand G 892..902 CDD:409353 2/9 (22%)
FN3 906..999 CDD:238020 33/187 (18%)
FN3 1006..1110 CDD:238020 26/106 (25%)
fn3 1117..1203 CDD:394996 24/85 (28%)
FN3 1215..1307 CDD:238020 27/101 (27%)
Ig <1334..1401 CDD:416386 13/70 (19%)
Ig strand C 1345..1349 CDD:409353 0/3 (0%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 3/8 (38%)
Ig strand F 1380..1388 CDD:409353 1/7 (14%)
Ig strand G 1394..1401 CDD:409353 1/6 (17%)
FN3 1405..1494 CDD:238020 16/102 (16%)
FN3 1499..1580 CDD:238020 21/86 (24%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020
FN3 1264..1375 CDD:238020 27/104 (26%)
FN3 1386..1469 CDD:214495 23/115 (20%)
LamG 1537..1699 CDD:238058 29/188 (15%)
LamG 1737..1890 CDD:238058 26/164 (16%)
FN3 1981..2071 CDD:238020 23/141 (16%)
FN3 2163..2253 CDD:238020 17/103 (17%)
FN3 2258..2341 CDD:238020 15/82 (18%)
FN3 2352..2443 CDD:238020 15/91 (16%)
FN3 2447..2544 CDD:238020 27/109 (25%)
FN3 2547..2633 CDD:238020 25/94 (27%)
FN3 2635..2733 CDD:238020 30/108 (28%)
FN3 2743..2807 CDD:238020 14/70 (20%)
FN3 2830..2932 CDD:238020 17/105 (16%)
fn3 2939..3014 CDD:278470 19/82 (23%)
FN3 3032..>3099 CDD:238020
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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