Sequence 1: | NP_001261571.1 | Gene: | Dscam4 / 2769008 | FlyBaseID: | FBgn0263219 | Length: | 1935 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_009291422.1 | Gene: | ush2a / 568982 | ZFINID: | ZDB-GENE-060503-794 | Length: | 5243 | Species: | Danio rerio |
Alignment Length: | 1976 | Identity: | 392/1976 - (19%) |
---|---|---|---|
Similarity: | 652/1976 - (32%) | Gaps: | 635/1976 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 25 NGLDLQGPIF---LHEPPHRVEFSNNSGGLIECSGHGSPPPEV----EWTPIPPQQDMVFQLSNG 82
Fly 83 SMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLS------------------------------- 116
Fly 117 ----REVHVRGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDI 177
Fly 178 GGKYTVLSNGELYINNAGPNDAYK--SYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVE 240
Fly 241 KHSMRHVV------LNGQTTLPCI---------AQGHPVPTYR-----WFK------EENEQLLP 279
Fly 280 LQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAH-------LQPQ 337
Fly 338 VQTVDVDKDAQFQCIVSGHPVHDVNWLH-------------------------DGKPILRDNRVE 377
Fly 378 ILTDPPR--LIIKK--------------------VQKEDPGMYQCFVSNEWEQIQSTAE-LQLGD 419
Fly 420 ASPEL----LYWFSEQTLQPGPTVSLKCVATG---------------NPLPQFTWSLDGFPIPDS 465
Fly 466 SRFLVGQY-------------VTIHDDV---------------------ISHVNISNVKEED--- 493
Fly 494 -GGEYTCTAQNAIG----KVSHSAKVNIYGLPY-----IREM-----PKIT-------------- 529
Fly 530 GISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTL--IIEQLQRLEDAGTYTCMAQ 592
Fly 593 NKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTG 657
Fly 658 NEVFRRLDEYSASLVIEHISSD------------HSGNYTCIASNVAGTERFTVPLTVNVPPKWI 710
Fly 711 LEPKDSSAQAGADVLLHCQSS----GYPTPTITWKKAIGPTPGEYKDFL-----YEP-----TVQ 761
Fly 762 --LFPNGTIFFKKISKE----SQGHF-----LCEAKNNIG-SGVSKVIFLKVNVPAHFQTKTKQI 814
Fly 815 SVAKGKQVHVQ--CNVQGDNPIDF----KWKI--QATQQYLDESLDSRYTIRDQVLDDGMVSELG 871
Fly 872 ISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPI 936
Fly 937 EEYHIYY------------KQISDI--WQ---------NAE-------------------HLTI- 958
Fly 959 --------------AGAQ-------TV-------------------------------INIQQLR 971
Fly 972 PAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPP---LAVRAEPKSSTEIFVTWDAPERDHW 1033
Fly 1034 NGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQG 1098
Fly 1099 SGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYE 1163
Fly 1164 TDPEVVKSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFYCRT----HEDVPSAPQAIKAI 1224
Fly 1225 PASSSKIIISWLPPDLPNGDITGYTFYMSMLEGGREEGTHKRLLGPFVEMHETVRTQES------ 1283
Fly 1284 -ATYQFWLTASTKMGEGEKTQV---VTVPPNN----KVPARIVSFSQRIVTPWKEHL----ELPC 1336
Fly 1337 RKVGAPAPVTIWRQDGHNMETSARKTIAKNG----TLYMKECQASDAGNYTCSVENTWGKDEIVY 1397
Fly 1398 NIVVKVP--PEAPNLTVINAYTDSLL-LEWMDNSHGGSPILGYVINYKRDNGDWEELQVDSKTTS 1459
Fly 1460 HLLTNLWCGTR-------------YQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITNN 1511
Fly 1512 STSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNH------IPPTERIYTVSDLVPGTKYQ 1570
Fly 1571 LKVTAHNNAGS-TTAIYNFTTLSTQG 1595 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam4 | NP_001261571.1 | Ig | 31..124 | CDD:416386 | 28/134 (21%) |
Ig strand A | 32..35 | CDD:409353 | 1/5 (20%) | ||
Ig strand A' | 41..45 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 48..57 | CDD:409353 | 1/8 (13%) | ||
Ig strand D | 75..78 | CDD:409353 | 1/2 (50%) | ||
Ig strand E | 83..88 | CDD:409353 | 0/4 (0%) | ||
Ig strand F | 101..109 | CDD:409353 | 2/7 (29%) | ||
Ig strand G | 112..124 | CDD:409353 | 7/46 (15%) | ||
Ig | 235..326 | CDD:416386 | 25/116 (22%) | ||
Ig strand A | 235..238 | CDD:409353 | 1/2 (50%) | ||
Ig strand A' | 244..248 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 251..258 | CDD:409353 | 2/6 (33%) | ||
Ig strand C | 266..271 | CDD:409353 | 1/9 (11%) | ||
Ig strand C' | 276..279 | CDD:409353 | 0/2 (0%) | ||
Ig strand D | 285..289 | CDD:409353 | 2/3 (67%) | ||
Ig strand E | 292..298 | CDD:409353 | 3/5 (60%) | ||
Ig strand F | 305..313 | CDD:409353 | 0/7 (0%) | ||
Ig strand G | 316..326 | CDD:409353 | 4/9 (44%) | ||
IgC2_3_Dscam | 329..417 | CDD:409549 | 21/142 (15%) | ||
Ig strand B | 347..351 | CDD:409549 | 0/3 (0%) | ||
Ig strand C | 360..364 | CDD:409549 | 1/3 (33%) | ||
Ig strand E | 383..387 | CDD:409549 | 1/5 (20%) | ||
Ig strand F | 397..402 | CDD:409549 | 0/4 (0%) | ||
Ig strand G | 410..413 | CDD:409549 | 0/2 (0%) | ||
IgI_4_Dscam | 422..516 | CDD:409548 | 23/154 (15%) | ||
Ig strand B | 439..443 | CDD:409548 | 0/3 (0%) | ||
Ig strand C | 452..456 | CDD:409548 | 1/3 (33%) | ||
Ig strand E | 482..486 | CDD:409548 | 0/3 (0%) | ||
Ig strand F | 496..501 | CDD:409548 | 1/4 (25%) | ||
Ig strand G | 509..512 | CDD:409548 | 1/2 (50%) | ||
IgI_5_Dscam | 520..607 | CDD:409550 | 20/112 (18%) | ||
Ig strand B | 536..540 | CDD:409550 | 1/3 (33%) | ||
Ig strand C | 549..553 | CDD:409550 | 0/3 (0%) | ||
Ig strand E | 571..575 | CDD:409550 | 2/5 (40%) | ||
Ig strand F | 586..591 | CDD:409550 | 0/4 (0%) | ||
Ig strand G | 600..603 | CDD:409550 | 1/2 (50%) | ||
Ig | 610..703 | CDD:416386 | 16/104 (15%) | ||
Ig strand A | 611..613 | CDD:409353 | 0/1 (0%) | ||
Ig strand A' | 620..624 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 627..636 | CDD:409353 | 0/8 (0%) | ||
Ig strand C | 641..648 | CDD:409353 | 2/6 (33%) | ||
Ig strand C' | 650..652 | CDD:409353 | 0/1 (0%) | ||
Ig strand D | 659..664 | CDD:409353 | 2/4 (50%) | ||
Ig strand E | 668..675 | CDD:409353 | 1/6 (17%) | ||
Ig strand F | 682..690 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 693..702 | CDD:409353 | 0/8 (0%) | ||
IgI_7_Dscam | 706..801 | CDD:409546 | 23/120 (19%) | ||
Ig strand B | 724..728 | CDD:409546 | 0/3 (0%) | ||
Ig strand C | 737..741 | CDD:409546 | 0/3 (0%) | ||
Ig strand E | 766..770 | CDD:409546 | 1/3 (33%) | ||
Ig strand F | 780..785 | CDD:409546 | 2/9 (22%) | ||
Ig strand G | 794..797 | CDD:409546 | 0/2 (0%) | ||
Ig | 818..904 | CDD:416386 | 16/93 (17%) | ||
putative Ig strand B | 820..827 | CDD:409353 | 2/8 (25%) | ||
putative Ig strand C | 835..841 | CDD:409353 | 2/11 (18%) | ||
putative Ig strand C' | 853..856 | CDD:409353 | 0/2 (0%) | ||
putative Ig strand D | 862..866 | CDD:409353 | 0/3 (0%) | ||
putative Ig strand E | 868..874 | CDD:409353 | 1/5 (20%) | ||
putative Ig strand F | 881..889 | CDD:409353 | 2/7 (29%) | ||
putative Ig strand G | 892..902 | CDD:409353 | 2/9 (22%) | ||
FN3 | 906..999 | CDD:238020 | 33/187 (18%) | ||
FN3 | 1006..1110 | CDD:238020 | 26/106 (25%) | ||
fn3 | 1117..1203 | CDD:394996 | 24/85 (28%) | ||
FN3 | 1215..1307 | CDD:238020 | 27/101 (27%) | ||
Ig | <1334..1401 | CDD:416386 | 13/70 (19%) | ||
Ig strand C | 1345..1349 | CDD:409353 | 0/3 (0%) | ||
Ig strand D | 1363..1366 | CDD:409353 | 0/2 (0%) | ||
Ig strand E | 1367..1372 | CDD:409353 | 3/8 (38%) | ||
Ig strand F | 1380..1388 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 1394..1401 | CDD:409353 | 1/6 (17%) | ||
FN3 | 1405..1494 | CDD:238020 | 16/102 (16%) | ||
FN3 | 1499..1580 | CDD:238020 | 21/86 (24%) | ||
ush2a | XP_009291422.1 | Laminin_G_3 | 160..297 | CDD:290121 | |
Laminin_N | 307..528 | CDD:295486 | |||
EGF_Lam | 529..577 | CDD:238012 | |||
EGF_Lam | 586..638 | CDD:238012 | |||
Laminin_EGF | 653..703 | CDD:278482 | |||
Laminin_EGF | 706..756 | CDD:278482 | |||
EGF_Lam | 759..797 | CDD:214543 | |||
Laminin_EGF | 808..857 | CDD:278482 | |||
EGF_Lam | 859..912 | CDD:238012 | |||
EGF_Lam | 913..963 | CDD:238012 | |||
EGF_Lam | 965..1014 | CDD:238012 | |||
EGF_Lam | 1015..1064 | CDD:238012 | |||
FN3 | 1177..1253 | CDD:238020 | |||
FN3 | 1264..1375 | CDD:238020 | 27/104 (26%) | ||
FN3 | 1386..1469 | CDD:214495 | 23/115 (20%) | ||
LamG | 1537..1699 | CDD:238058 | 29/188 (15%) | ||
LamG | 1737..1890 | CDD:238058 | 26/164 (16%) | ||
FN3 | 1981..2071 | CDD:238020 | 23/141 (16%) | ||
FN3 | 2163..2253 | CDD:238020 | 17/103 (17%) | ||
FN3 | 2258..2341 | CDD:238020 | 15/82 (18%) | ||
FN3 | 2352..2443 | CDD:238020 | 15/91 (16%) | ||
FN3 | 2447..2544 | CDD:238020 | 27/109 (25%) | ||
FN3 | 2547..2633 | CDD:238020 | 25/94 (27%) | ||
FN3 | 2635..2733 | CDD:238020 | 30/108 (28%) | ||
FN3 | 2743..2807 | CDD:238020 | 14/70 (20%) | ||
FN3 | 2830..2932 | CDD:238020 | 17/105 (16%) | ||
fn3 | 2939..3014 | CDD:278470 | 19/82 (23%) | ||
FN3 | 3032..>3099 | CDD:238020 | |||
FN3 | 3542..3611 | CDD:238020 | |||
FN3 | 3615..3701 | CDD:238020 | |||
fn3 | 3718..3784 | CDD:278470 | |||
FN3 | 3801..3887 | CDD:238020 | |||
FN3 | 3908..3971 | CDD:238020 | |||
FN3 | 3996..4086 | CDD:238020 | |||
FN3 | 4186..4284 | CDD:238020 | |||
fn3 | 4288..4366 | CDD:278470 | |||
FN3 | 4382..4465 | CDD:238020 | |||
FN3 | 4470..4553 | CDD:238020 | |||
FN3 | 4555..4653 | CDD:238020 | |||
FN3 | 4679..4753 | CDD:238020 | |||
fn3 | 4760..4830 | CDD:278470 | |||
FN3 | 4864..4955 | CDD:238020 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |